miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28960 3' -64.4 NC_006146.1 + 106659 0.66 0.54566
Target:  5'- gAGCCaCG-CCCCUc-CCGCCccggCCCAGGCg -3'
miRNA:   3'- -UCGG-GCuGGGGGucGGCGG----GGGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 24251 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 14186 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 75815 0.66 0.555115
Target:  5'- aGGCCCaGguuccagcaACCCCaccaCAGCUGCCCCaCGAGu -3'
miRNA:   3'- -UCGGG-C---------UGGGG----GUCGGCGGGG-GUUUg -5'
28960 3' -64.4 NC_006146.1 + 28935 0.66 0.54566
Target:  5'- cAGCCCcGCCCCgc-CCGCCCggCCAGAg -3'
miRNA:   3'- -UCGGGcUGGGGgucGGCGGG--GGUUUg -5'
28960 3' -64.4 NC_006146.1 + 26498 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 52135 0.66 0.555115
Target:  5'- cAGCUCGGgCCCCaccaggucgaAGCCGCUgCCGuuGGCc -3'
miRNA:   3'- -UCGGGCUgGGGG----------UCGGCGGgGGU--UUG- -5'
28960 3' -64.4 NC_006146.1 + 29697 0.66 0.536258
Target:  5'- uGCCCaGuucCCCCCAGgaGCCCCUGGu- -3'
miRNA:   3'- uCGGG-Cu--GGGGGUCggCGGGGGUUug -5'
28960 3' -64.4 NC_006146.1 + 3825 0.66 0.526913
Target:  5'- aGGCCaggcggGGCaCCCCcGCUGCCCuaCCGGACc -3'
miRNA:   3'- -UCGGg-----CUG-GGGGuCGGCGGG--GGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 42482 0.66 0.536258
Target:  5'- cGGCCCGGaucacccuCCCCUGGCCGUguucugCCUGGACu -3'
miRNA:   3'- -UCGGGCU--------GGGGGUCGGCGg-----GGGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 3073 0.66 0.54566
Target:  5'- uGGCCCaGGCUaccgUCCAGaCCGCUCUgGAGCu -3'
miRNA:   3'- -UCGGG-CUGG----GGGUC-GGCGGGGgUUUG- -5'
28960 3' -64.4 NC_006146.1 + 23420 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 25946 0.66 0.564617
Target:  5'- gAGCCCuGGUCCCCAGCaGCCUCUc--- -3'
miRNA:   3'- -UCGGG-CUGGGGGUCGgCGGGGGuuug -5'
28960 3' -64.4 NC_006146.1 + 110423 0.66 0.554167
Target:  5'- gAGCUgGcCCCCCGGCCucucaccGCuCCCCGc-- -3'
miRNA:   3'- -UCGGgCuGGGGGUCGG-------CG-GGGGUuug -5'
28960 3' -64.4 NC_006146.1 + 17264 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 18095 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 45532 0.66 0.54566
Target:  5'- gGGCCUgGGCCUCCuugggcuuGGCCGCCCUg---- -3'
miRNA:   3'- -UCGGG-CUGGGGG--------UCGGCGGGGguuug -5'
28960 3' -64.4 NC_006146.1 + 27329 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 92091 0.66 0.564617
Target:  5'- cGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28960 3' -64.4 NC_006146.1 + 112653 0.66 0.526913
Target:  5'- aGGCCaccgGGCCCCUuuuauAGCCcuuguccacGCCCCCGGuguGCg -3'
miRNA:   3'- -UCGGg---CUGGGGG-----UCGG---------CGGGGGUU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.