Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28960 | 5' | -57.7 | NC_006146.1 | + | 154737 | 0.66 | 0.894129 |
Target: 5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3' miRNA: 3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 49878 | 0.66 | 0.887608 |
Target: 5'- cCGUCgGgaggcuGGGGUCCUCcGGuaGGAGAGGu -3' miRNA: 3'- uGCAGgU------CCCCAGGAGcUC--CUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 43599 | 0.66 | 0.894129 |
Target: 5'- gGCGggaggCCGGgucGGGUCg--GGGGAAGAGGg -3' miRNA: 3'- -UGCa----GGUC---CCCAGgagCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 45062 | 0.67 | 0.819948 |
Target: 5'- ---cCUAGGGGcggcugaggugCCUCGuGGGGAGAGGg -3' miRNA: 3'- ugcaGGUCCCCa----------GGAGC-UCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 133060 | 0.67 | 0.836276 |
Target: 5'- gGCGUCUccaGGGuGGUUC-CGGGuGggGGGGu -3' miRNA: 3'- -UGCAGG---UCC-CCAGGaGCUC-CuuCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 138646 | 0.67 | 0.859443 |
Target: 5'- -gGUCUGGGGGUUCUau-GGuGGGAGGa -3' miRNA: 3'- ugCAGGUCCCCAGGAgcuCC-UUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 2584 | 0.67 | 0.851906 |
Target: 5'- gACGUuuGGaGGG-CgUCGAauaGGGAGAGGg -3' miRNA: 3'- -UGCAggUC-CCCaGgAGCU---CCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 44106 | 0.67 | 0.859443 |
Target: 5'- aACcUCCAGGccccGGcugCCcggCGAGGAGGGGGg -3' miRNA: 3'- -UGcAGGUCC----CCa--GGa--GCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 47673 | 0.67 | 0.851906 |
Target: 5'- gGCGgCCAGGG--UCUCGuGGAuGGAGGa -3' miRNA: 3'- -UGCaGGUCCCcaGGAGCuCCU-UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 123330 | 0.67 | 0.819948 |
Target: 5'- gACGUCugcggggccguCAGGGGUCUcgcCGAGGGAGcucuGGc -3' miRNA: 3'- -UGCAG-----------GUCCCCAGGa--GCUCCUUCu---CC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 146956 | 0.67 | 0.856451 |
Target: 5'- ---cCCGGGGGgaaagucgcccgcCCUUGGGGcAGGAGGg -3' miRNA: 3'- ugcaGGUCCCCa------------GGAGCUCC-UUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 165382 | 0.68 | 0.766441 |
Target: 5'- gGCG-CCAGGGGUCagugCGAugacuauGGAAGuGGc -3' miRNA: 3'- -UGCaGGUCCCCAGga--GCU-------CCUUCuCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 169233 | 0.68 | 0.776453 |
Target: 5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3' miRNA: 3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 168301 | 0.68 | 0.776453 |
Target: 5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3' miRNA: 3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 167369 | 0.68 | 0.776453 |
Target: 5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3' miRNA: 3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 144651 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 153884 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 156962 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 147728 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 141573 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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