Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28960 | 5' | -57.7 | NC_006146.1 | + | 14254 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 29644 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 26566 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 23488 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 20410 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 17332 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 56231 | 0.81 | 0.197949 |
Target: 5'- cCGUCCAGcGGGUCCgCGGGGGcGGAGGc -3' miRNA: 3'- uGCAGGUC-CCCAGGaGCUCCU-UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 64102 | 0.8 | 0.228444 |
Target: 5'- ---aCCuGGGGUCCUCGAGGAuggcacggguGGAGGa -3' miRNA: 3'- ugcaGGuCCCCAGGAGCUCCU----------UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 41047 | 0.77 | 0.30128 |
Target: 5'- cCGUCCgcggcggcccuGGGGG-CCUCGGGGuGGAGGg -3' miRNA: 3'- uGCAGG-----------UCCCCaGGAGCUCCuUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 41109 | 0.74 | 0.458448 |
Target: 5'- gGCGUgCAGGGccuccacuuuaggGUCC-CGGGGGAGGGGc -3' miRNA: 3'- -UGCAgGUCCC-------------CAGGaGCUCCUUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 49522 | 0.74 | 0.459345 |
Target: 5'- gGCGggugaUCCGGGGGcUCCUCuGGGGGcGGAGGc -3' miRNA: 3'- -UGC-----AGGUCCCC-AGGAG-CUCCU-UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 168349 | 0.73 | 0.514727 |
Target: 5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3' miRNA: 3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 167417 | 0.73 | 0.514727 |
Target: 5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3' miRNA: 3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 170396 | 0.73 | 0.514727 |
Target: 5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3' miRNA: 3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 169465 | 0.73 | 0.514727 |
Target: 5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3' miRNA: 3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 168533 | 0.73 | 0.514727 |
Target: 5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3' miRNA: 3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 167601 | 0.73 | 0.514727 |
Target: 5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3' miRNA: 3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 170212 | 0.73 | 0.514727 |
Target: 5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3' miRNA: 3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 169281 | 0.73 | 0.514727 |
Target: 5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3' miRNA: 3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5' |
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28960 | 5' | -57.7 | NC_006146.1 | + | 102378 | 0.72 | 0.582451 |
Target: 5'- -gGUCUccGGGUCCUCGGGGAgcuGGuGGu -3' miRNA: 3'- ugCAGGucCCCAGGAGCUCCU---UCuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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