Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 18042 | 1.14 | 0.000839 |
Target: 5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 21120 | 1.14 | 0.000839 |
Target: 5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 24198 | 1.14 | 0.000839 |
Target: 5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 27276 | 1.14 | 0.000839 |
Target: 5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 14965 | 1.06 | 0.002978 |
Target: 5'- aCCUCC-CCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGuGGCAGUAGCGGCCGAGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 129611 | 0.88 | 0.050385 |
Target: 5'- gCCUCCGCCGUCuccGUCGCCGGgucCUCCGCg -3' miRNA: 3'- -GGAGGUGGCAG---UAGCGGCC---GAGGCGg -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 166699 | 0.83 | 0.105251 |
Target: 5'- aCCaCCACCGUCAUgaaGCCGGUUCcCGCCg -3' miRNA: 3'- -GGaGGUGGCAGUAg--CGGCCGAG-GCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 10219 | 0.77 | 0.255282 |
Target: 5'- gCCUCUACCGgcccuggUCAUgUGCCGGCUCCugaagGCCu -3' miRNA: 3'- -GGAGGUGGC-------AGUA-GCGGCCGAGG-----CGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 48311 | 0.76 | 0.286273 |
Target: 5'- cCCUCCACCGUCGgaggUGCUGGCggugguggGCCa -3' miRNA: 3'- -GGAGGUGGCAGUa---GCGGCCGagg-----CGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 57188 | 0.74 | 0.355455 |
Target: 5'- aCUUCACCGUC----CCGGCUgCCGCCg -3' miRNA: 3'- gGAGGUGGCAGuagcGGCCGA-GGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 51707 | 0.72 | 0.444174 |
Target: 5'- gCUCCcgGCCGUCAUucauucggauaaCGCCGaGCaaaagCCGCCg -3' miRNA: 3'- gGAGG--UGGCAGUA------------GCGGC-CGa----GGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 58848 | 0.72 | 0.444174 |
Target: 5'- aCUgCGCCGUCAagGCCGGCa--GCCc -3' miRNA: 3'- gGAgGUGGCAGUagCGGCCGaggCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 117147 | 0.72 | 0.488404 |
Target: 5'- aCCUCCGCCcgccgcccGUCuUCGCCccGGCgcagCCGCg -3' miRNA: 3'- -GGAGGUGG--------CAGuAGCGG--CCGa---GGCGg -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 124112 | 0.71 | 0.4975 |
Target: 5'- gCCUuuGCCcUCG-CGCCGGCcggccagccaUCCGCCc -3' miRNA: 3'- -GGAggUGGcAGUaGCGGCCG----------AGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 8886 | 0.71 | 0.506671 |
Target: 5'- aCUCCACCGUgGa-GCCGGuCUCCcaggguGCCu -3' miRNA: 3'- gGAGGUGGCAgUagCGGCC-GAGG------CGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 70138 | 0.71 | 0.506671 |
Target: 5'- aUCUuuGCCGcCuUCGCCuGGCUCCugGCCg -3' miRNA: 3'- -GGAggUGGCaGuAGCGG-CCGAGG--CGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 68954 | 0.71 | 0.506671 |
Target: 5'- aUCUCCGCCGUUGUCucaUCGGUcaCCGCCc -3' miRNA: 3'- -GGAGGUGGCAGUAGc--GGCCGa-GGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 164699 | 0.71 | 0.506671 |
Target: 5'- aCCUUCACCGUCuucaccAUCGCCcccaucucCUCCGUCa -3' miRNA: 3'- -GGAGGUGGCAG------UAGCGGcc------GAGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 101667 | 0.71 | 0.51036 |
Target: 5'- uCCUCCAg-GUCAUCGUccaagagacagaggaCGGuCUCCGCCc -3' miRNA: 3'- -GGAGGUggCAGUAGCG---------------GCC-GAGGCGG- -5' |
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28962 | 3' | -60.1 | NC_006146.1 | + | 111208 | 0.71 | 0.515914 |
Target: 5'- aCCUCCGCC-UCcggCaCCGGCauugCCGCCg -3' miRNA: 3'- -GGAGGUGGcAGua-GcGGCCGa---GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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