miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28962 3' -60.1 NC_006146.1 + 796 0.7 0.563044
Target:  5'- gCC-CCGCCGgcccccccugCggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GuaGCGGCCGa----GGCGG- -5'
28962 3' -60.1 NC_006146.1 + 1706 0.68 0.688742
Target:  5'- gCUCUGCUGUUucUGCUGuCUCCGCCu -3'
miRNA:   3'- gGAGGUGGCAGuaGCGGCcGAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 1727 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28962 3' -60.1 NC_006146.1 + 2659 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28962 3' -60.1 NC_006146.1 + 3591 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28962 3' -60.1 NC_006146.1 + 4532 0.68 0.717304
Target:  5'- --aCCAUC-UCggUGCCGGCagCCGCCg -3'
miRNA:   3'- ggaGGUGGcAGuaGCGGCCGa-GGCGG- -5'
28962 3' -60.1 NC_006146.1 + 8886 0.71 0.506671
Target:  5'- aCUCCACCGUgGa-GCCGGuCUCCcaggguGCCu -3'
miRNA:   3'- gGAGGUGGCAgUagCGGCC-GAGG------CGG- -5'
28962 3' -60.1 NC_006146.1 + 9119 0.66 0.823525
Target:  5'- -aUCCACCGUgGa-GCCGGuCUCCcacggggcguuGCCu -3'
miRNA:   3'- ggAGGUGGCAgUagCGGCC-GAGG-----------CGG- -5'
28962 3' -60.1 NC_006146.1 + 10219 0.77 0.255282
Target:  5'- gCCUCUACCGgcccuggUCAUgUGCCGGCUCCugaagGCCu -3'
miRNA:   3'- -GGAGGUGGC-------AGUA-GCGGCCGAGG-----CGG- -5'
28962 3' -60.1 NC_006146.1 + 13210 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 13302 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 13375 0.66 0.781282
Target:  5'- aCCgcgaCCACCGUgGUCuGCgCGGCcacggaCUGCCu -3'
miRNA:   3'- -GGa---GGUGGCAgUAG-CG-GCCGa-----GGCGG- -5'
28962 3' -60.1 NC_006146.1 + 14965 1.06 0.002978
Target:  5'- aCCUCC-CCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGuGGCAGUAGCGGCCGAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 15739 0.67 0.73603
Target:  5'- uCCUCCGCCcagcaaCGUgGCCcuGGC-CCGCUg -3'
miRNA:   3'- -GGAGGUGGca----GUAgCGG--CCGaGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 16288 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 16380 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 17671 0.66 0.822716
Target:  5'- cCCaCCACCGUCAUguCCGGCaUCUacgggcgGCCc -3'
miRNA:   3'- -GGaGGUGGCAGUAgcGGCCG-AGG-------CGG- -5'
28962 3' -60.1 NC_006146.1 + 18042 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 19366 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28962 3' -60.1 NC_006146.1 + 19458 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.