Results 21 - 40 of 150 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 19699 | 0.7 | 0.600587 |
Target: 5'- aUCUCCugCGUCcucugGUCcacgggggaggagGCCGGCcgcuaCCGCCg -3' miRNA: 3'- -GGAGGugGCAG-----UAG-------------CGGCCGa----GGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 21120 | 1.14 | 0.000839 |
Target: 5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 22444 | 0.71 | 0.544027 |
Target: 5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3' miRNA: 3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 22536 | 0.67 | 0.763489 |
Target: 5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3' miRNA: 3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 23710 | 0.68 | 0.706889 |
Target: 5'- cCCUCCucugcgcACCGggCGaaggggCGCCGGUcugcgCCGCCg -3' miRNA: 3'- -GGAGG-------UGGCa-GUa-----GCGGCCGa----GGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 24198 | 1.14 | 0.000839 |
Target: 5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 25522 | 0.71 | 0.544027 |
Target: 5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3' miRNA: 3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 25614 | 0.67 | 0.763489 |
Target: 5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3' miRNA: 3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 27276 | 1.14 | 0.000839 |
Target: 5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3' miRNA: 3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 28333 | 0.66 | 0.80705 |
Target: 5'- --gCCAauCCG-CA-CGCaGGCUCCGCCu -3' miRNA: 3'- ggaGGU--GGCaGUaGCGgCCGAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 28600 | 0.71 | 0.544027 |
Target: 5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3' miRNA: 3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 28692 | 0.67 | 0.763489 |
Target: 5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3' miRNA: 3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 33109 | 0.68 | 0.707839 |
Target: 5'- gCCggguggCCGCCGgcggguUCGCCGGg-CCGCUg -3' miRNA: 3'- -GGa-----GGUGGCagu---AGCGGCCgaGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 33222 | 0.7 | 0.553511 |
Target: 5'- gCUCCggggcaGCCGgguggcCGCCGGCgggUCCGCCg -3' miRNA: 3'- gGAGG------UGGCagua--GCGGCCG---AGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 33344 | 0.69 | 0.64039 |
Target: 5'- gCUCCggggcaGCCGgguggcCGCCGGUgggUCCGCCg -3' miRNA: 3'- gGAGG------UGGCagua--GCGGCCG---AGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 33926 | 0.7 | 0.563044 |
Target: 5'- uCCUCCGuCCGgugggugCGgucCGCUGGgUCCGCUg -3' miRNA: 3'- -GGAGGU-GGCa------GUa--GCGGCCgAGGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 40978 | 0.67 | 0.75443 |
Target: 5'- --aCCGCCGUgGUgccgCGCCGGCgCC-CCa -3' miRNA: 3'- ggaGGUGGCAgUA----GCGGCCGaGGcGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 42494 | 0.67 | 0.772442 |
Target: 5'- cCCUCCccugGCCGUguUCuGCCuggacugcGGCUaCUGCCu -3' miRNA: 3'- -GGAGG----UGGCAguAG-CGG--------CCGA-GGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 43419 | 0.67 | 0.760782 |
Target: 5'- aCCcCCGCCGUC-UCcucguccaucaguaGCCuGCgggCCGCCa -3' miRNA: 3'- -GGaGGUGGCAGuAG--------------CGGcCGa--GGCGG- -5' |
|||||||
28962 | 3' | -60.1 | NC_006146.1 | + | 43476 | 0.71 | 0.534596 |
Target: 5'- gCCUCCucggcgGCCGUUGaCaCCGGCUCCGgCg -3' miRNA: 3'- -GGAGG------UGGCAGUaGcGGCCGAGGCgG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home