Results 1 - 20 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28962 | 5' | -58 | NC_006146.1 | + | 168499 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 55148 | 0.66 | 0.863632 |
Target: 5'- -cGGGAccCCCAAuGUc-AGCCGCCGGg -3' miRNA: 3'- uuCCCUcuGGGUU-CGcuUCGGUGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 75572 | 0.66 | 0.824067 |
Target: 5'- cGGGGAGAauuCCUGuaaUGAGGCCGCCGu -3' miRNA: 3'- uUCCCUCU---GGGUuc-GCUUCGGUGGCc -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 167567 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 33403 | 0.66 | 0.837229 |
Target: 5'- gGGGGGuGGCCCGccugggcaccgcuGCGccGCCGCuCGGu -3' miRNA: 3'- -UUCCCuCUGGGUu------------CGCuuCGGUG-GCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 170362 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 139165 | 0.66 | 0.840449 |
Target: 5'- cGGGGGGGCgCCu-GUGAGGCgGCUGu -3' miRNA: 3'- uUCCCUCUG-GGuuCGCUUCGgUGGCc -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 109294 | 0.66 | 0.840449 |
Target: 5'- gGAGGGAucucGGCCCcGGcCGcGGCCGCUGc -3' miRNA: 3'- -UUCCCU----CUGGGuUC-GCuUCGGUGGCc -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 169431 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 170583 | 0.66 | 0.832346 |
Target: 5'- -cGGGAGAaugacagCUggGCGuggcGAGCgCGCCGGg -3' miRNA: 3'- uuCCCUCUg------GGuuCGC----UUCG-GUGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 99373 | 0.66 | 0.848368 |
Target: 5'- cGGGccgcgcguuGAGGCCCAggAGCGAgucGGCCagggggguGCCGGc -3' miRNA: 3'- uUCC---------CUCUGGGU--UCGCU---UCGG--------UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 155575 | 0.66 | 0.824067 |
Target: 5'- -cGGGGcGCCCGccaGggGCaCACCGGg -3' miRNA: 3'- uuCCCUcUGGGUucgCuuCG-GUGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 66781 | 0.66 | 0.843639 |
Target: 5'- cGGGGugcgaccuggacaccGGGCCCAGGCGgcGCaugaGgCGGa -3' miRNA: 3'- uUCCC---------------UCUGGGUUCGCuuCGg---UgGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 168351 | 0.66 | 0.848368 |
Target: 5'- --cGGGGGCCagcGCGggGUC-CCGGg -3' miRNA: 3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 49524 | 0.66 | 0.846012 |
Target: 5'- -cGGGuGAUCCGggggcuccucugggGGCgGAGGCCacGCCGGc -3' miRNA: 3'- uuCCCuCUGGGU--------------UCG-CUUCGG--UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 167419 | 0.66 | 0.848368 |
Target: 5'- --cGGGGGCCagcGCGggGUC-CCGGg -3' miRNA: 3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 110259 | 0.66 | 0.848368 |
Target: 5'- uGAGGGuGcACUCGGG-GGAGCCAUCGc -3' miRNA: 3'- -UUCCCuC-UGGGUUCgCUUCGGUGGCc -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 169283 | 0.66 | 0.848368 |
Target: 5'- --cGGGGGCCagcGCGggGUC-CCGGg -3' miRNA: 3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 89081 | 0.66 | 0.840449 |
Target: 5'- cGGGGGAGGuguucCUCGAcCGAuGCUACCGGc -3' miRNA: 3'- -UUCCCUCU-----GGGUUcGCUuCGGUGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 52095 | 0.66 | 0.832346 |
Target: 5'- --cGGGGGCC--GGCGAGGCCAUCu- -3' miRNA: 3'- uucCCUCUGGguUCGCUUCGGUGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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