miRNA display CGI


Results 21 - 40 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28962 5' -58 NC_006146.1 + 145397 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28962 5' -58 NC_006146.1 + 169493 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28962 5' -58 NC_006146.1 + 36638 0.73 0.477385
Target:  5'- uAGGGGGACCUguGUGAAGgCGCgGGg -3'
miRNA:   3'- uUCCCUCUGGGuuCGCUUCgGUGgCC- -5'
28962 5' -58 NC_006146.1 + 142319 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28962 5' -58 NC_006146.1 + 168561 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28962 5' -58 NC_006146.1 + 167629 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28962 5' -58 NC_006146.1 + 57363 0.73 0.477385
Target:  5'- uGAGGGAGGCUgcGGCGguGgCGCCGGu -3'
miRNA:   3'- -UUCCCUCUGGguUCGCuuCgGUGGCC- -5'
28962 5' -58 NC_006146.1 + 154631 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28962 5' -58 NC_006146.1 + 157708 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28962 5' -58 NC_006146.1 + 62313 0.72 0.496116
Target:  5'- -uGGGAGAgCCC-AGCGAGGCCagagacGCCGc -3'
miRNA:   3'- uuCCCUCU-GGGuUCGCUUCGG------UGGCc -5'
28962 5' -58 NC_006146.1 + 158268 0.72 0.505606
Target:  5'- cGGGGGGACUCuGGCccAGCC-CCGGg -3'
miRNA:   3'- uUCCCUCUGGGuUCGcuUCGGuGGCC- -5'
28962 5' -58 NC_006146.1 + 56419 0.72 0.505606
Target:  5'- -cGGGAG-CCUAAGCGucauGCCcCCGGu -3'
miRNA:   3'- uuCCCUCuGGGUUCGCuu--CGGuGGCC- -5'
28962 5' -58 NC_006146.1 + 51582 0.72 0.524812
Target:  5'- cGGGaGGGGCCCGGG-GGAGCCAgaGGg -3'
miRNA:   3'- uUCC-CUCUGGGUUCgCUUCGGUggCC- -5'
28962 5' -58 NC_006146.1 + 44957 0.71 0.544288
Target:  5'- cGGGGAGGcCCCGGGgGAcucgaccgcGGUgGCCGGa -3'
miRNA:   3'- uUCCCUCU-GGGUUCgCU---------UCGgUGGCC- -5'
28962 5' -58 NC_006146.1 + 144726 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 23730 0.71 0.544288
Target:  5'- gAAGGGGcGCCgGucuGCGccGCCGCCGGg -3'
miRNA:   3'- -UUCCCUcUGGgUu--CGCuuCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 147804 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 153960 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 141649 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 150882 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.