Results 41 - 60 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28962 | 5' | -58 | NC_006146.1 | + | 155575 | 0.66 | 0.824067 |
Target: 5'- -cGGGGcGCCCGccaGggGCaCACCGGg -3' miRNA: 3'- uuCCCUcUGGGUucgCuuCG-GUGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 39138 | 0.67 | 0.819018 |
Target: 5'- aGGGGGAcuacauauguaauguGACCCuGGUGAauugcaguuuGGCCuCCGGg -3' miRNA: 3'- -UUCCCU---------------CUGGGuUCGCU----------UCGGuGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 157326 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 154248 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 145014 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 39051 | 0.67 | 0.815619 |
Target: 5'- cAGGcaGGGGCCCu-GUGAauGGUCGCCGGc -3' miRNA: 3'- uUCC--CUCUGGGuuCGCU--UCGGUGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 141936 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 55169 | 0.67 | 0.815619 |
Target: 5'- cAGGGGGGugaccgcguCCCAGGCuGcGGCCGCggCGGg -3' miRNA: 3'- -UUCCCUCu--------GGGUUCG-CuUCGGUG--GCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 151170 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 33357 | 0.67 | 0.815619 |
Target: 5'- -cGGGuGGCCgCcGGUGGGuCCGCCGGg -3' miRNA: 3'- uuCCCuCUGG-GuUCGCUUcGGUGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 148092 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 117721 | 0.67 | 0.80701 |
Target: 5'- cAAGGccGGGGCCgAGGCcGAGCCuuCCGGc -3' miRNA: 3'- -UUCC--CUCUGGgUUCGcUUCGGu-GGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 68746 | 0.67 | 0.80701 |
Target: 5'- uGGuGGAGGCCCAGGUGGccaAGCUucaGgCGGu -3' miRNA: 3'- uUC-CCUCUGGGUUCGCU---UCGG---UgGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 167299 | 0.67 | 0.80701 |
Target: 5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3' miRNA: 3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 168231 | 0.67 | 0.80701 |
Target: 5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3' miRNA: 3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 169163 | 0.67 | 0.80701 |
Target: 5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3' miRNA: 3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 53332 | 0.67 | 0.80701 |
Target: 5'- -cGaGGAGGCCC-GGCG--GCCGCgGGg -3' miRNA: 3'- uuC-CCUCUGGGuUCGCuuCGGUGgCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 34128 | 0.67 | 0.80701 |
Target: 5'- cGGGGGAGGaucgcggCCGGGCcucccGGAGCC-CCGGc -3' miRNA: 3'- -UUCCCUCUg------GGUUCG-----CUUCGGuGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 113673 | 0.67 | 0.80701 |
Target: 5'- aGAGGuGgcucGGGCCCGGGCccGGCCuCCGGc -3' miRNA: 3'- -UUCC-C----UCUGGGUUCGcuUCGGuGGCC- -5' |
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28962 | 5' | -58 | NC_006146.1 | + | 48011 | 0.67 | 0.80701 |
Target: 5'- -cGGGAGGCUuggCGGGgGAGGCaCGgCGGg -3' miRNA: 3'- uuCCCUCUGG---GUUCgCUUCG-GUgGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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