miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28962 5' -58 NC_006146.1 + 1219 0.68 0.713875
Target:  5'- -cGGGaAGACCCGGGgGcGGGCCACgCGc -3'
miRNA:   3'- uuCCC-UCUGGGUUCgC-UUCGGUG-GCc -5'
28962 5' -58 NC_006146.1 + 2151 0.68 0.713875
Target:  5'- -cGGGaAGACCCGGGgGcGGGCCACgCGc -3'
miRNA:   3'- uuCCC-UCUGGGUUCgC-UUCGGUG-GCc -5'
28962 5' -58 NC_006146.1 + 3083 0.68 0.713875
Target:  5'- -cGGGaAGACCCGGGgGcGGGCCACgCGc -3'
miRNA:   3'- uuCCC-UCUGGGUUCgC-UUCGGUG-GCc -5'
28962 5' -58 NC_006146.1 + 3256 0.67 0.780296
Target:  5'- uAGGG-GACCUGgggacGGCGcAGGCCacgaGCCGGg -3'
miRNA:   3'- uUCCCuCUGGGU-----UCGC-UUCGG----UGGCC- -5'
28962 5' -58 NC_006146.1 + 5037 0.66 0.84915
Target:  5'- cAGGGAGACCaCGuucuuugacaaguauGCGGggcuGGCCGuuGGa -3'
miRNA:   3'- uUCCCUCUGG-GUu--------------CGCU----UCGGUggCC- -5'
28962 5' -58 NC_006146.1 + 7926 0.73 0.459011
Target:  5'- gAAGGGGGACCCGGGaaaGggGCgccCGCCa- -3'
miRNA:   3'- -UUCCCUCUGGGUUCg--CuuCG---GUGGcc -5'
28962 5' -58 NC_006146.1 + 10670 0.74 0.414801
Target:  5'- cGGGGAGGCCCgGGGCGAuacCCGCgGGc -3'
miRNA:   3'- uUCCCUCUGGG-UUCGCUuc-GGUGgCC- -5'
28962 5' -58 NC_006146.1 + 12752 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28962 5' -58 NC_006146.1 + 12850 0.67 0.777558
Target:  5'- -cGaGGAGGCgCCuggGGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- uuC-CCUCUG-GGu--UCGCUUCGG--------------UGGCC- -5'
28962 5' -58 NC_006146.1 + 13264 0.69 0.684222
Target:  5'- cAGGGGcuggugcccaAGACCCAGGCGguGcCCGCCc- -3'
miRNA:   3'- -UUCCC----------UCUGGGUUCGCuuC-GGUGGcc -5'
28962 5' -58 NC_006146.1 + 13971 0.67 0.798248
Target:  5'- cGAGcGGAG-CCCGucAGCGccGCCACCc- -3'
miRNA:   3'- -UUC-CCUCuGGGU--UCGCuuCGGUGGcc -5'
28962 5' -58 NC_006146.1 + 14856 0.68 0.723636
Target:  5'- -cGGGAGGCCgAGGgGGcAGCCagggaGCUGGa -3'
miRNA:   3'- uuCCCUCUGGgUUCgCU-UCGG-----UGGCC- -5'
28962 5' -58 NC_006146.1 + 15000 1.07 0.002578
Target:  5'- uAGGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 15831 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28962 5' -58 NC_006146.1 + 15929 0.68 0.710933
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGu -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28962 5' -58 NC_006146.1 + 15995 0.68 0.733321
Target:  5'- gAAGGGcGGacgcggucaGCCCGGGCGAGGCCcuGCCc- -3'
miRNA:   3'- -UUCCC-UC---------UGGGUUCGCUUCGG--UGGcc -5'
28962 5' -58 NC_006146.1 + 18078 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 18909 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28962 5' -58 NC_006146.1 + 19006 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28962 5' -58 NC_006146.1 + 21156 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.