miRNA display CGI


Results 21 - 40 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28962 5' -58 NC_006146.1 + 21986 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28962 5' -58 NC_006146.1 + 22084 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28962 5' -58 NC_006146.1 + 23730 0.71 0.544288
Target:  5'- gAAGGGGcGCCgGucuGCGccGCCGCCGGg -3'
miRNA:   3'- -UUCCCUcUGGgUu--CGCuuCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 24199 0.66 0.863632
Target:  5'- gGAGGGcuGGGCCU--GCGAGGUUcuguugggGCCGGg -3'
miRNA:   3'- -UUCCC--UCUGGGuuCGCUUCGG--------UGGCC- -5'
28962 5' -58 NC_006146.1 + 24234 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 25064 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28962 5' -58 NC_006146.1 + 25162 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28962 5' -58 NC_006146.1 + 27312 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 28142 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28962 5' -58 NC_006146.1 + 28240 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28962 5' -58 NC_006146.1 + 31701 0.66 0.840449
Target:  5'- -uGGGGGACCgcGGCu--GCCACCGc -3'
miRNA:   3'- uuCCCUCUGGguUCGcuuCGGUGGCc -5'
28962 5' -58 NC_006146.1 + 32940 0.68 0.765562
Target:  5'- -cGGGAGGCCCGGccgcgauccucccccGUGAacggGGCgCGCUGGg -3'
miRNA:   3'- uuCCCUCUGGGUU---------------CGCU----UCG-GUGGCC- -5'
28962 5' -58 NC_006146.1 + 33020 0.69 0.704046
Target:  5'- cGGGGAcccccugccGGCCCgGGGCGggGCC-CgGGa -3'
miRNA:   3'- uUCCCU---------CUGGG-UUCGCuuCGGuGgCC- -5'
28962 5' -58 NC_006146.1 + 33111 0.66 0.856098
Target:  5'- -cGGGuGGCCgCcGGCGGGuUCGCCGGg -3'
miRNA:   3'- uuCCCuCUGG-GuUCGCUUcGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 33157 0.68 0.723636
Target:  5'- gGGGGGuGGCCCGGcugggcaccgccGCGccGCCGCuCGGu -3'
miRNA:   3'- -UUCCCuCUGGGUU------------CGCuuCGGUG-GCC- -5'
28962 5' -58 NC_006146.1 + 33207 0.71 0.554115
Target:  5'- gGGGGGAGGCCgGAgGgGGAGCCgggaugggGCUGGg -3'
miRNA:   3'- -UUCCCUCUGGgUU-CgCUUCGG--------UGGCC- -5'
28962 5' -58 NC_006146.1 + 33235 0.7 0.634076
Target:  5'- -cGGGuGGCCgCcGGCGGGuCCGCCGGg -3'
miRNA:   3'- uuCCCuCUGG-GuUCGCUUcGGUGGCC- -5'
28962 5' -58 NC_006146.1 + 33281 0.68 0.723636
Target:  5'- gGGGGGuGGCCCGGcugggcaccgcuGCGccGCCGCuCGGu -3'
miRNA:   3'- -UUCCCuCUGGGUU------------CGCuuCGGUG-GCC- -5'
28962 5' -58 NC_006146.1 + 33340 0.69 0.704046
Target:  5'- -cGGGcagcGGACCCGgcAGCGGcccGGCCACCc- -3'
miRNA:   3'- uuCCC----UCUGGGU--UCGCU---UCGGUGGcc -5'
28962 5' -58 NC_006146.1 + 33357 0.67 0.815619
Target:  5'- -cGGGuGGCCgCcGGUGGGuCCGCCGGg -3'
miRNA:   3'- uuCCCuCUGG-GuUCGCUUcGGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.