miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28964 3' -62.9 NC_006146.1 + 95470 0.65 0.647758
Target:  5'- gGGGGCuCUgAgAGCuCCGGGUCaaacucgggggagaAGGCCu -3'
miRNA:   3'- gCUCCG-GAgUgUCG-GGUCCGG--------------UCCGG- -5'
28964 3' -62.9 NC_006146.1 + 2765 0.65 0.647758
Target:  5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5'
28964 3' -62.9 NC_006146.1 + 167641 0.66 0.611697
Target:  5'- gCGGGGCCcggCGCGuGCCgGGGgCCcggGGGCg -3'
miRNA:   3'- -GCUCCGGa--GUGU-CGGgUCC-GG---UCCGg -5'
28964 3' -62.9 NC_006146.1 + 48323 0.66 0.611697
Target:  5'- gGAGGUgCUgGCGGUgguGGGCCAGGCg -3'
miRNA:   3'- gCUCCG-GAgUGUCGgg-UCCGGUCCGg -5'
28964 3' -62.9 NC_006146.1 + 148143 0.66 0.592262
Target:  5'- -uGGGCUucgugcuggUCAgGGCCCGGGUCuucucuacGGCCa -3'
miRNA:   3'- gcUCCGG---------AGUgUCGGGUCCGGu-------CCGG- -5'
28964 3' -62.9 NC_006146.1 + 147113 0.66 0.592262
Target:  5'- uGGGGCUcaGCGGgcCCCAGacGCgCAGGCCg -3'
miRNA:   3'- gCUCCGGagUGUC--GGGUC--CG-GUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 102559 0.66 0.611697
Target:  5'- aGAGGCgUC-CAGCagCAGGuCCGaGCCg -3'
miRNA:   3'- gCUCCGgAGuGUCGg-GUCC-GGUcCGG- -5'
28964 3' -62.9 NC_006146.1 + 23901 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 20823 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 58191 0.66 0.601969
Target:  5'- -cGGGCCUCAgGgacGCCCugcugcGGGCCAGaCCc -3'
miRNA:   3'- gcUCCGGAGUgU---CGGG------UCCGGUCcGG- -5'
28964 3' -62.9 NC_006146.1 + 57306 0.66 0.600998
Target:  5'- gGAGGCCUuuguggaccuggaCGCguGGCUCucuggGGGCgGGGCCc -3'
miRNA:   3'- gCUCCGGA-------------GUG--UCGGG-----UCCGgUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 82031 0.66 0.592262
Target:  5'- gGAGuugcaGCCacaACAGcCCCAGGCCccGCCg -3'
miRNA:   3'- gCUC-----CGGag-UGUC-GGGUCCGGucCGG- -5'
28964 3' -62.9 NC_006146.1 + 50713 0.66 0.611697
Target:  5'- aGAGGCCgggUCAUAGaCgaGGGCCcGGUCg -3'
miRNA:   3'- gCUCCGG---AGUGUC-GggUCCGGuCCGG- -5'
28964 3' -62.9 NC_006146.1 + 47651 0.66 0.611697
Target:  5'- --uGGCCgcggCcCGGCCCAGcGCgGcGGCCa -3'
miRNA:   3'- gcuCCGGa---GuGUCGGGUC-CGgU-CCGG- -5'
28964 3' -62.9 NC_006146.1 + 53335 0.66 0.611697
Target:  5'- gGAGGCCcgGCGGCCgCGGGgC-GGCg -3'
miRNA:   3'- gCUCCGGagUGUCGG-GUCCgGuCCGg -5'
28964 3' -62.9 NC_006146.1 + 26978 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 102862 0.66 0.592262
Target:  5'- aGGGcaGCCgcCACcuGGUCguGGCCGGGCCc -3'
miRNA:   3'- gCUC--CGGa-GUG--UCGGguCCGGUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 75160 0.66 0.600998
Target:  5'- cCGGGGCCaaCAcCAGCCCcccccacuGGGCauuuuguUAGGCCc -3'
miRNA:   3'- -GCUCCGGa-GU-GUCGGG--------UCCG-------GUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 14667 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28964 3' -62.9 NC_006146.1 + 165945 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.