Results 1 - 20 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28964 | 3' | -62.9 | NC_006146.1 | + | 160 | 0.68 | 0.506751 |
Target: 5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3' miRNA: 3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 525 | 0.67 | 0.553756 |
Target: 5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3' miRNA: 3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 584 | 0.79 | 0.110021 |
Target: 5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3' miRNA: 3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 691 | 0.68 | 0.497548 |
Target: 5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3' miRNA: 3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 733 | 0.69 | 0.426935 |
Target: 5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3' miRNA: 3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 1091 | 0.68 | 0.506751 |
Target: 5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3' miRNA: 3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 1456 | 0.67 | 0.553756 |
Target: 5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3' miRNA: 3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 1515 | 0.79 | 0.110021 |
Target: 5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3' miRNA: 3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 1622 | 0.68 | 0.497548 |
Target: 5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3' miRNA: 3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 1664 | 0.69 | 0.426935 |
Target: 5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3' miRNA: 3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 2023 | 0.68 | 0.506751 |
Target: 5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3' miRNA: 3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 2388 | 0.67 | 0.553756 |
Target: 5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3' miRNA: 3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 2447 | 0.79 | 0.110021 |
Target: 5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3' miRNA: 3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 2554 | 0.68 | 0.497548 |
Target: 5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3' miRNA: 3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 2596 | 0.69 | 0.426935 |
Target: 5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3' miRNA: 3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 2765 | 0.65 | 0.647758 |
Target: 5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3' miRNA: 3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 2956 | 0.68 | 0.506751 |
Target: 5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3' miRNA: 3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 3257 | 0.67 | 0.534773 |
Target: 5'- aGGGGaCCUggggACGGCgCAGGCCAcGaGCCg -3' miRNA: 3'- gCUCC-GGAg---UGUCGgGUCCGGU-C-CGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 3320 | 0.67 | 0.553756 |
Target: 5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3' miRNA: 3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 3379 | 0.79 | 0.110021 |
Target: 5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3' miRNA: 3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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