Results 21 - 40 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28964 | 3' | -62.9 | NC_006146.1 | + | 98334 | 0.74 | 0.22228 |
Target: 5'- aCGGGGCCgggCGCGGCCCGucccGGuCCAGGagaCa -3' miRNA: 3'- -GCUCCGGa--GUGUCGGGU----CC-GGUCCg--G- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 61933 | 0.74 | 0.21715 |
Target: 5'- cCGAGGCCuUCACgGGCCCggugaucaAGGCUcaggacacggGGGCCg -3' miRNA: 3'- -GCUCCGG-AGUG-UCGGG--------UCCGG----------UCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 80926 | 0.78 | 0.11565 |
Target: 5'- uCGA-GCCUCcCGGCCCA-GCCAGGCCc -3' miRNA: 3'- -GCUcCGGAGuGUCGGGUcCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 78830 | 0.79 | 0.097052 |
Target: 5'- -cGGGCCgccccccgcaGCAGcCCCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGag--------UGUC-GGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 146827 | 0.8 | 0.08751 |
Target: 5'- gCGAGGCCgCGCcagcguagAGCCCGGGCCuggcucgGGGCCg -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGGUCCGG-------UCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 24924 | 1.1 | 0.000681 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCc -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 28001 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 21846 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 18768 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 15690 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 47330 | 0.78 | 0.11565 |
Target: 5'- uGAuGGCCUC-CAG-CCGGGCCAGGCg -3' miRNA: 3'- gCU-CCGGAGuGUCgGGUCCGGUCCGg -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 129031 | 0.78 | 0.130918 |
Target: 5'- cCGGGGCacggCGCAGCCCGaGCUGGGCCc -3' miRNA: 3'- -GCUCCGga--GUGUCGGGUcCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 113673 | 0.76 | 0.159249 |
Target: 5'- aGAGGUggCUCG-GGCCCGGGCCcGGCCu -3' miRNA: 3'- gCUCCG--GAGUgUCGGGUCCGGuCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 51976 | 0.77 | 0.148028 |
Target: 5'- gGAGGUCUC-CGGCaugCGGGCCGGGCg -3' miRNA: 3'- gCUCCGGAGuGUCGg--GUCCGGUCCGg -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 78883 | 0.77 | 0.147667 |
Target: 5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 78765 | 0.77 | 0.147667 |
Target: 5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 78705 | 0.77 | 0.147667 |
Target: 5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 78645 | 0.77 | 0.147667 |
Target: 5'- -cAGGCCgggCccgccccccagcaGCAGCCaCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGa--G-------------UGUCGG-GUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 78585 | 0.77 | 0.147667 |
Target: 5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3' miRNA: 3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5' |
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28964 | 3' | -62.9 | NC_006146.1 | + | 155142 | 0.77 | 0.144451 |
Target: 5'- cCGcGGCgUCGCAGCagCGGGCCAgGGCCa -3' miRNA: 3'- -GCuCCGgAGUGUCGg-GUCCGGU-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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