Results 1 - 20 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28967 | 3' | -60.6 | NC_006146.1 | + | 157976 | 0.66 | 0.755571 |
Target: 5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3' miRNA: 3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 142685 | 0.66 | 0.755571 |
Target: 5'- uCGGGUccGGCCgCCGGAGGgcucuaacCCGucucuGUCCa -3' miRNA: 3'- -GCCCA--CCGG-GGUCUCC--------GGUuu---CAGGa -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 161750 | 0.66 | 0.755571 |
Target: 5'- gGGGUGGCggCuGAGGuCCGAGGgggcgCCUg -3' miRNA: 3'- gCCCACCGggGuCUCC-GGUUUCa----GGA- -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 144886 | 0.66 | 0.755571 |
Target: 5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3' miRNA: 3'- gcCCACC-GGGgUCUCCGGUUUcagga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 142587 | 0.66 | 0.755571 |
Target: 5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3' miRNA: 3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 147964 | 0.66 | 0.755571 |
Target: 5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3' miRNA: 3'- gcCCACC-GGGgUCUCCGGUUUcagga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 157198 | 0.66 | 0.755571 |
Target: 5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3' miRNA: 3'- gcCCACC-GGGgUCUCCGGUUUcagga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 148742 | 0.66 | 0.755571 |
Target: 5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3' miRNA: 3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 141808 | 0.66 | 0.755571 |
Target: 5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3' miRNA: 3'- gcCCACC-GGGgUCUCCGGUUUcagga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 39733 | 0.66 | 0.755571 |
Target: 5'- aCGGG-GGCCUCGGAGugauugaCCAGgguGUCCa -3' miRNA: 3'- -GCCCaCCGGGGUCUCc------GGUUu--CAGGa -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 151042 | 0.66 | 0.755571 |
Target: 5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3' miRNA: 3'- gcCCACC-GGGgUCUCCGGUUUcagga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 145665 | 0.66 | 0.755571 |
Target: 5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3' miRNA: 3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 151820 | 0.66 | 0.755571 |
Target: 5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3' miRNA: 3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 154898 | 0.66 | 0.755571 |
Target: 5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3' miRNA: 3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 154120 | 0.66 | 0.755571 |
Target: 5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3' miRNA: 3'- gcCCACC-GGGgUCUCCGGUUUcagga -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 164480 | 0.66 | 0.755571 |
Target: 5'- aGGGcccacaUGGCCCU--GGGCCAAAGggaCCc -3' miRNA: 3'- gCCC------ACCGGGGucUCCGGUUUCa--GGa -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 28755 | 0.66 | 0.753716 |
Target: 5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3' miRNA: 3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 13365 | 0.66 | 0.753716 |
Target: 5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3' miRNA: 3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 16443 | 0.66 | 0.753716 |
Target: 5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3' miRNA: 3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5' |
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28967 | 3' | -60.6 | NC_006146.1 | + | 19521 | 0.66 | 0.753716 |
Target: 5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3' miRNA: 3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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