miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28967 3' -60.6 NC_006146.1 + 28755 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28967 3' -60.6 NC_006146.1 + 13365 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28967 3' -60.6 NC_006146.1 + 126314 0.66 0.752787
Target:  5'- aCGGGaaaGGCagcggCCCGGGGGCCAggaggaacacgcaaAGGUUCa -3'
miRNA:   3'- -GCCCa--CCG-----GGGUCUCCGGU--------------UUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 47316 0.66 0.746256
Target:  5'- cCGGGccuccuggaugaUGGCCuCCAGccGGGCCAGgcgccguuuccAGUCUg -3'
miRNA:   3'- -GCCC------------ACCGG-GGUC--UCCGGUU-----------UCAGGa -5'
28967 3' -60.6 NC_006146.1 + 41063 0.66 0.746256
Target:  5'- uGGG-GGCCUCgggguggagGGAGGCCAGGGa--- -3'
miRNA:   3'- gCCCaCCGGGG---------UCUCCGGUUUCagga -5'
28967 3' -60.6 NC_006146.1 + 27626 0.66 0.745319
Target:  5'- uGGGUGGCCagGGAaguuccgGGCCAgcGUCa- -3'
miRNA:   3'- gCCCACCGGggUCU-------CCGGUuuCAGga -5'
28967 3' -60.6 NC_006146.1 + 115768 0.66 0.736847
Target:  5'- uGGG-GGUCCCgauaaacauGGAGGUgGAGGcCCUg -3'
miRNA:   3'- gCCCaCCGGGG---------UCUCCGgUUUCaGGA- -5'
28967 3' -60.6 NC_006146.1 + 155878 0.66 0.736847
Target:  5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3'
miRNA:   3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 149722 0.66 0.736847
Target:  5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3'
miRNA:   3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 152800 0.66 0.736847
Target:  5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3'
miRNA:   3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 146645 0.66 0.736847
Target:  5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3'
miRNA:   3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 143567 0.66 0.736847
Target:  5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3'
miRNA:   3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 137859 0.66 0.727353
Target:  5'- uGGGUgggcgugucccgGGCCCCGccccGGGCCGgcaggGGGUCCc -3'
miRNA:   3'- gCCCA------------CCGGGGUc---UCCGGU-----UUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 41757 0.66 0.727353
Target:  5'- aCGGGUGGgcuucCCgCCGGAGGCCcugcGcCCg -3'
miRNA:   3'- -GCCCACC-----GG-GGUCUCCGGuuu-CaGGa -5'
28967 3' -60.6 NC_006146.1 + 123379 0.66 0.727353
Target:  5'- cCGGG-GGCCCCgcaaccuggcuGGAacuggccgcggcGGCCGAAGaCCa -3'
miRNA:   3'- -GCCCaCCGGGG-----------UCU------------CCGGUUUCaGGa -5'
28967 3' -60.6 NC_006146.1 + 42324 0.66 0.717782
Target:  5'- gCGaGGUugcugacuGGCCCgGGAGGUCAGuGUCUg -3'
miRNA:   3'- -GC-CCA--------CCGGGgUCUCCGGUUuCAGGa -5'
28967 3' -60.6 NC_006146.1 + 131478 0.66 0.708142
Target:  5'- aCGGGccaGGCCCC---GGCCAacuucugcuucAAGUCCa -3'
miRNA:   3'- -GCCCa--CCGGGGucuCCGGU-----------UUCAGGa -5'
28967 3' -60.6 NC_006146.1 + 156901 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28967 3' -60.6 NC_006146.1 + 147668 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28967 3' -60.6 NC_006146.1 + 150745 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.