miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28967 5' -55.3 NC_006146.1 + 24664 0.73 0.647211
Target:  5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3'
miRNA:   3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 85916 0.75 0.536812
Target:  5'- gCGGGGCUUUacccuGGGGCCUGGAugG-CCu -3'
miRNA:   3'- gGUCCCGAAG-----UCUCGGGUCUugCaGG- -5'
28967 5' -55.3 NC_006146.1 + 99557 0.74 0.566515
Target:  5'- cCCGGGGCagagaUCGGGGUCCAGGAgGUa- -3'
miRNA:   3'- -GGUCCCGa----AGUCUCGGGUCUUgCAgg -5'
28967 5' -55.3 NC_006146.1 + 59255 0.74 0.566515
Target:  5'- gCCuGGGUgUUCAGGGCCUGGccGACGUCUu -3'
miRNA:   3'- -GGuCCCG-AAGUCUCGGGUC--UUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 98239 0.73 0.606717
Target:  5'- gCCGGGGUg-CAGGGCggaCAGcACGUCCa -3'
miRNA:   3'- -GGUCCCGaaGUCUCGg--GUCuUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 12351 0.73 0.647211
Target:  5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3'
miRNA:   3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 15430 0.73 0.647211
Target:  5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3'
miRNA:   3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 18508 0.73 0.647211
Target:  5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3'
miRNA:   3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 21586 0.73 0.647211
Target:  5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3'
miRNA:   3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 78489 0.75 0.527029
Target:  5'- --uGGGCUUCAGaAGCCCGGAuUGgCCa -3'
miRNA:   3'- gguCCCGAAGUC-UCGGGUCUuGCaGG- -5'
28967 5' -55.3 NC_006146.1 + 108973 0.75 0.498101
Target:  5'- aCCAGGGCccUGGAGCCCcuGAugGcCCg -3'
miRNA:   3'- -GGUCCCGaaGUCUCGGGu-CUugCaGG- -5'
28967 5' -55.3 NC_006146.1 + 39733 0.77 0.407517
Target:  5'- aCgGGGGCcUCGGAGUgauugaCCAGggUGUCCa -3'
miRNA:   3'- -GgUCCCGaAGUCUCG------GGUCuuGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 16580 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 19658 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 22736 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 25814 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 28892 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 56258 0.78 0.369449
Target:  5'- gCGGGGCcgUCcucggcggggagcgaGGAGgCCAGGACGUCCa -3'
miRNA:   3'- gGUCCCGa-AG---------------UCUCgGGUCUUGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 65210 0.78 0.374274
Target:  5'- -gGGGGCccUgGGAGCCCGGG-CGUCCa -3'
miRNA:   3'- ggUCCCGa-AgUCUCGGGUCUuGCAGG- -5'
28967 5' -55.3 NC_006146.1 + 74967 0.78 0.374274
Target:  5'- aCCGGGGCcaguaCAGAGUCCAGaAGCGgggCCa -3'
miRNA:   3'- -GGUCCCGaa---GUCUCGGGUC-UUGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.