Results 21 - 40 of 467 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28969 | 3' | -64.4 | NC_006146.1 | + | 106659 | 0.66 | 0.54566 |
Target: 5'- gAGCCaCG-CCCCUc-CCGCCccggCCCAGGCg -3' miRNA: 3'- -UCGG-GCuGGGGGucGGCGG----GGGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 24251 | 0.66 | 0.526913 |
Target: 5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3' miRNA: 3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 14186 | 0.66 | 0.564617 |
Target: 5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3' miRNA: 3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 75815 | 0.66 | 0.555115 |
Target: 5'- aGGCCCaGguuccagcaACCCCaccaCAGCUGCCCCaCGAGu -3' miRNA: 3'- -UCGGG-C---------UGGGG----GUCGGCGGGG-GUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 28935 | 0.66 | 0.54566 |
Target: 5'- cAGCCCcGCCCCgc-CCGCCCggCCAGAg -3' miRNA: 3'- -UCGGGcUGGGGgucGGCGGG--GGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 26498 | 0.66 | 0.564617 |
Target: 5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3' miRNA: 3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 52135 | 0.66 | 0.555115 |
Target: 5'- cAGCUCGGgCCCCaccaggucgaAGCCGCUgCCGuuGGCc -3' miRNA: 3'- -UCGGGCUgGGGG----------UCGGCGGgGGU--UUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 29697 | 0.66 | 0.536258 |
Target: 5'- uGCCCaGuucCCCCCAGgaGCCCCUGGu- -3' miRNA: 3'- uCGGG-Cu--GGGGGUCggCGGGGGUUug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 3825 | 0.66 | 0.526913 |
Target: 5'- aGGCCaggcggGGCaCCCCcGCUGCCCuaCCGGACc -3' miRNA: 3'- -UCGGg-----CUG-GGGGuCGGCGGG--GGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 42482 | 0.66 | 0.536258 |
Target: 5'- cGGCCCGGaucacccuCCCCUGGCCGUguucugCCUGGACu -3' miRNA: 3'- -UCGGGCU--------GGGGGUCGGCGg-----GGGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 3073 | 0.66 | 0.54566 |
Target: 5'- uGGCCCaGGCUaccgUCCAGaCCGCUCUgGAGCu -3' miRNA: 3'- -UCGGG-CUGG----GGGUC-GGCGGGGgUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 23420 | 0.66 | 0.564617 |
Target: 5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3' miRNA: 3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 25946 | 0.66 | 0.564617 |
Target: 5'- gAGCCCuGGUCCCCAGCaGCCUCUc--- -3' miRNA: 3'- -UCGGG-CUGGGGGUCGgCGGGGGuuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 110423 | 0.66 | 0.554167 |
Target: 5'- gAGCUgGcCCCCCGGCCucucaccGCuCCCCGc-- -3' miRNA: 3'- -UCGGgCuGGGGGUCGG-------CG-GGGGUuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 17264 | 0.66 | 0.564617 |
Target: 5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3' miRNA: 3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 18095 | 0.66 | 0.526913 |
Target: 5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3' miRNA: 3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 45532 | 0.66 | 0.54566 |
Target: 5'- gGGCCUgGGCCUCCuugggcuuGGCCGCCCUg---- -3' miRNA: 3'- -UCGGG-CUGGGGG--------UCGGCGGGGguuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 27329 | 0.66 | 0.526913 |
Target: 5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3' miRNA: 3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 92091 | 0.66 | 0.564617 |
Target: 5'- cGGCCCGGCCUggGGCUGCUgCUggGg -3' miRNA: 3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 112653 | 0.66 | 0.526913 |
Target: 5'- aGGCCaccgGGCCCCUuuuauAGCCcuuguccacGCCCCCGGuguGCg -3' miRNA: 3'- -UCGGg---CUGGGGG-----UCGG---------CGGGGGUU---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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