Results 21 - 40 of 467 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28969 | 3' | -64.4 | NC_006146.1 | + | 115873 | 0.8 | 0.066031 |
Target: 5'- cGGcCCCGACCCCCAucccGcCCGCCCCCAu-- -3' miRNA: 3'- -UC-GGGCUGGGGGU----C-GGCGGGGGUuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 42247 | 0.79 | 0.087199 |
Target: 5'- uGCCCG-UCCCC-GCCGUCCCCGAAUg -3' miRNA: 3'- uCGGGCuGGGGGuCGGCGGGGGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 42704 | 0.78 | 0.094013 |
Target: 5'- uGGCCCGgcgccgcggcGCCCCCcugGGCCGCCUCCcGGCg -3' miRNA: 3'- -UCGGGC----------UGGGGG---UCGGCGGGGGuUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 48403 | 0.78 | 0.096394 |
Target: 5'- cGGCCuccauucucuCGACCCCgCcGCCGUCCCCGAGCa -3' miRNA: 3'- -UCGG----------GCUGGGG-GuCGGCGGGGGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 130875 | 0.78 | 0.096394 |
Target: 5'- cGGCUaCGGCCCCCAGCagGCCCCCugcuACg -3' miRNA: 3'- -UCGG-GCUGGGGGUCGg-CGGGGGuu--UG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 47208 | 0.78 | 0.101328 |
Target: 5'- cGCCaGGCCCCUGGCCGCCUCCGc-- -3' miRNA: 3'- uCGGgCUGGGGGUCGGCGGGGGUuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 1414 | 0.78 | 0.103884 |
Target: 5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3' miRNA: 3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 483 | 0.78 | 0.103884 |
Target: 5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3' miRNA: 3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 2346 | 0.78 | 0.103884 |
Target: 5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3' miRNA: 3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 3278 | 0.78 | 0.103884 |
Target: 5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3' miRNA: 3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 136840 | 0.77 | 0.111642 |
Target: 5'- cGGCCCcgugccacggGACCCCCGGCCggcauagGCCCCgGGACc -3' miRNA: 3'- -UCGGG----------CUGGGGGUCGG-------CGGGGgUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 3470 | 0.77 | 0.111919 |
Target: 5'- cGCCCGACCCC---CCGCCCCgGGACc -3' miRNA: 3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 675 | 0.77 | 0.111919 |
Target: 5'- cGCCCGACCCC---CCGCCCCgGGACc -3' miRNA: 3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 2538 | 0.77 | 0.111919 |
Target: 5'- cGCCCGACCCC---CCGCCCCgGGACc -3' miRNA: 3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 1606 | 0.77 | 0.111919 |
Target: 5'- cGCCCGACCCC---CCGCCCCgGGACc -3' miRNA: 3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 48759 | 0.77 | 0.114725 |
Target: 5'- cGCCCGGCCUCCAGCaGCCgCCGcAGCu -3' miRNA: 3'- uCGGGCUGGGGGUCGgCGGgGGU-UUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 156102 | 0.77 | 0.119645 |
Target: 5'- cGGCCCGGccggccucuccuucCCCUCAGCCGCCaacaggugCCCGAGCc -3' miRNA: 3'- -UCGGGCU--------------GGGGGUCGGCGG--------GGGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 20020 | 0.77 | 0.123539 |
Target: 5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3' miRNA: 3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 29254 | 0.77 | 0.123539 |
Target: 5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3' miRNA: 3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 13865 | 0.77 | 0.123539 |
Target: 5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3' miRNA: 3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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