Results 41 - 60 of 467 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28969 | 3' | -64.4 | NC_006146.1 | + | 3073 | 0.66 | 0.54566 |
Target: 5'- uGGCCCaGGCUaccgUCCAGaCCGCUCUgGAGCu -3' miRNA: 3'- -UCGGG-CUGG----GGGUC-GGCGGGGgUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 28935 | 0.66 | 0.54566 |
Target: 5'- cAGCCCcGCCCCgc-CCGCCCggCCAGAg -3' miRNA: 3'- -UCGGGcUGGGGgucGGCGGG--GGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 156549 | 0.66 | 0.54566 |
Target: 5'- gGGaCCCGACCCCaccagcagGGCCGCaacggCCCu-GCg -3' miRNA: 3'- -UC-GGGCUGGGGg-------UCGGCGg----GGGuuUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 41882 | 0.66 | 0.544718 |
Target: 5'- uGCgCCGugCCCCGGaccugagucgcguCUGCCUgCGGACg -3' miRNA: 3'- uCG-GGCugGGGGUC-------------GGCGGGgGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 84813 | 0.66 | 0.544718 |
Target: 5'- gAGCUCGAgagcCCCCCuGCCuagacauGCCCCUuGAUc -3' miRNA: 3'- -UCGGGCU----GGGGGuCGG-------CGGGGGuUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 32944 | 0.66 | 0.536258 |
Target: 5'- aGGCCCGGCCgCgAuCCuCCCCCGugAACg -3' miRNA: 3'- -UCGGGCUGGgGgUcGGcGGGGGU--UUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 102702 | 0.66 | 0.536258 |
Target: 5'- cGUCUGACCUCCcggAGCCGCUgcgCCCGcguccuGACg -3' miRNA: 3'- uCGGGCUGGGGG---UCGGCGG---GGGU------UUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 16215 | 0.66 | 0.536258 |
Target: 5'- gGGCgCaGACCaCCCAGCagccagCGCCCCCc--- -3' miRNA: 3'- -UCGgG-CUGG-GGGUCG------GCGGGGGuuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 136719 | 0.66 | 0.536258 |
Target: 5'- uGCCUGGCCCaggguCCGGCUGggggcgcacCCCCCAc-- -3' miRNA: 3'- uCGGGCUGGG-----GGUCGGC---------GGGGGUuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 52893 | 0.66 | 0.536258 |
Target: 5'- cGGcCCCGAgCCCCGcauggucugcGUgGCCCCCcggGGGCg -3' miRNA: 3'- -UC-GGGCUgGGGGU----------CGgCGGGGG---UUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 42482 | 0.66 | 0.536258 |
Target: 5'- cGGCCCGGaucacccuCCCCUGGCCGUguucugCCUGGACu -3' miRNA: 3'- -UCGGGCU--------GGGGGUCGGCGg-----GGGUUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 29697 | 0.66 | 0.536258 |
Target: 5'- uGCCCaGuucCCCCCAGgaGCCCCUGGu- -3' miRNA: 3'- uCGGG-Cu--GGGGGUCggCGGGGGUUug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 137694 | 0.66 | 0.536258 |
Target: 5'- -uCCCGGCUCCCccuccGGCCucCCCCCGGGg -3' miRNA: 3'- ucGGGCUGGGGG-----UCGGc-GGGGGUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 136775 | 0.66 | 0.536258 |
Target: 5'- aGGCCCGGCCgCgAuCCuCCCCCGugAACg -3' miRNA: 3'- -UCGGGCUGGgGgUcGGcGGGGGU--UUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 19951 | 0.66 | 0.536258 |
Target: 5'- cGCCUccCUCCCGGCC-CCCCUcAGCu -3' miRNA: 3'- uCGGGcuGGGGGUCGGcGGGGGuUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 377 | 0.66 | 0.536258 |
Target: 5'- cGCCgCGcCCCCuCAGgccCCGCCCgCCGcGCg -3' miRNA: 3'- uCGG-GCuGGGG-GUC---GGCGGG-GGUuUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 68033 | 0.66 | 0.535321 |
Target: 5'- gGGCCCGGCCacgaCCagguggcGGCUGCCCU--GGCu -3' miRNA: 3'- -UCGGGCUGGg---GG-------UCGGCGGGGguUUG- -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 21072 | 0.66 | 0.526913 |
Target: 5'- aGGCCCuGGCCgCCCacaccacccggAGCCuguuugugGCCCCCAu-- -3' miRNA: 3'- -UCGGG-CUGG-GGG-----------UCGG--------CGGGGGUuug -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 59011 | 0.66 | 0.526913 |
Target: 5'- aAGCCCuGCUCaCCAGCacuGCCCCgAGGg -3' miRNA: 3'- -UCGGGcUGGG-GGUCGg--CGGGGgUUUg -5' |
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28969 | 3' | -64.4 | NC_006146.1 | + | 3825 | 0.66 | 0.526913 |
Target: 5'- aGGCCaggcggGGCaCCCCcGCUGCCCuaCCGGACc -3' miRNA: 3'- -UCGGg-----CUG-GGGGuCGGCGGG--GGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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