miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28969 3' -64.4 NC_006146.1 + 228 0.69 0.364948
Target:  5'- -cCCCGgggcGCCCCUGGCCuCCCCCGcGCc -3'
miRNA:   3'- ucGGGC----UGGGGGUCGGcGGGGGUuUG- -5'
28969 3' -64.4 NC_006146.1 + 377 0.66 0.536258
Target:  5'- cGCCgCGcCCCCuCAGgccCCGCCCgCCGcGCg -3'
miRNA:   3'- uCGG-GCuGGGG-GUC---GGCGGG-GGUuUG- -5'
28969 3' -64.4 NC_006146.1 + 414 0.69 0.357417
Target:  5'- gGGUCCGgggaaGCCCCCcGCuCGCCCCUcgggucgcgGGACa -3'
miRNA:   3'- -UCGGGC-----UGGGGGuCG-GCGGGGG---------UUUG- -5'
28969 3' -64.4 NC_006146.1 + 483 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 527 0.72 0.257742
Target:  5'- aGGCCCGGCCUCCacacacGGCCucuccgcggGCCUCCAcACg -3'
miRNA:   3'- -UCGGGCUGGGGG------UCGG---------CGGGGGUuUG- -5'
28969 3' -64.4 NC_006146.1 + 593 0.71 0.294621
Target:  5'- gGGCgCGGCCCggcgCCAGCCcuGCCCCCu--- -3'
miRNA:   3'- -UCGgGCUGGG----GGUCGG--CGGGGGuuug -5'
28969 3' -64.4 NC_006146.1 + 675 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 722 0.72 0.240761
Target:  5'- cGGCCCcGCCCUCGGgaGCCCCCucAGCc -3'
miRNA:   3'- -UCGGGcUGGGGGUCggCGGGGGu-UUG- -5'
28969 3' -64.4 NC_006146.1 + 815 0.71 0.269598
Target:  5'- cGGCgCCGGCCCCUcccgccGGCCaUCCCCAcGCg -3'
miRNA:   3'- -UCG-GGCUGGGGG------UCGGcGGGGGUuUG- -5'
28969 3' -64.4 NC_006146.1 + 1138 0.76 0.138619
Target:  5'- cGCCgGugCCCCcgcgaggguccccgGGCCGCCCCgGGGCu -3'
miRNA:   3'- uCGGgCugGGGG--------------UCGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 1246 0.68 0.454703
Target:  5'- cGCCCGccACgCCCAGCUGUcauucuCCCCGccAACg -3'
miRNA:   3'- uCGGGC--UGgGGGUCGGCG------GGGGU--UUG- -5'
28969 3' -64.4 NC_006146.1 + 1344 0.69 0.396151
Target:  5'- gGGCCCcggggaaGCCCCCcGCuCGCCCCUcgggucgcgGGACa -3'
miRNA:   3'- -UCGGGc------UGGGGGuCG-GCGGGGG---------UUUG- -5'
28969 3' -64.4 NC_006146.1 + 1414 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 1458 0.72 0.257742
Target:  5'- aGGCCCGGCCUCCacacacGGCCucuccgcggGCCUCCAcACg -3'
miRNA:   3'- -UCGGGCUGGGGG------UCGG---------CGGGGGUuUG- -5'
28969 3' -64.4 NC_006146.1 + 1524 0.71 0.294621
Target:  5'- gGGCgCGGCCCggcgCCAGCCcuGCCCCCu--- -3'
miRNA:   3'- -UCGgGCUGGG----GGUCGG--CGGGGGuuug -5'
28969 3' -64.4 NC_006146.1 + 1606 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 1653 0.72 0.240761
Target:  5'- cGGCCCcGCCCUCGGgaGCCCCCucAGCc -3'
miRNA:   3'- -UCGGGcUGGGGGUCggCGGGGGu-UUG- -5'
28969 3' -64.4 NC_006146.1 + 1747 0.71 0.269598
Target:  5'- aGGCgCCGGCCCCUcccgccGGCCaUCCCCAcGCg -3'
miRNA:   3'- -UCG-GGCUGGGGG------UCGGcGGGGGUuUG- -5'
28969 3' -64.4 NC_006146.1 + 2070 0.76 0.138619
Target:  5'- cGCCgGugCCCCcgcgaggguccccgGGCCGCCCCgGGGCu -3'
miRNA:   3'- uCGGgCugGGGG--------------UCGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 2178 0.68 0.454703
Target:  5'- cGCCCGccACgCCCAGCUGUcauucuCCCCGccAACg -3'
miRNA:   3'- uCGGGC--UGgGGGUCGGCG------GGGGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.