miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28969 3' -64.4 NC_006146.1 + 170617 0.7 0.342685
Target:  5'- gGGCCCG-CCCCCGGgUcUUCCCGGGCu -3'
miRNA:   3'- -UCGGGCuGGGGGUCgGcGGGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 170312 0.68 0.437488
Target:  5'- aGGgCUGGCgCCgGGCCGCgCCCCcGGCc -3'
miRNA:   3'- -UCgGGCUGgGGgUCGGCG-GGGGuUUG- -5'
28969 3' -64.4 NC_006146.1 + 169685 0.69 0.357417
Target:  5'- uGGCCCG-CCCCCGGgUcUUCCCGGGCu -3'
miRNA:   3'- -UCGGGCuGGGGGUCgGcGGGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 169381 0.68 0.437488
Target:  5'- aGGgCUGGCgCCgGGCCGCgCCCCcGGCc -3'
miRNA:   3'- -UCgGGCUGgGGgUCGGCG-GGGGuUUG- -5'
28969 3' -64.4 NC_006146.1 + 168753 0.69 0.357417
Target:  5'- uGGCCCG-CCCCCGGgUcUUCCCGGGCu -3'
miRNA:   3'- -UCGGGCuGGGGGUCgGcGGGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 168449 0.68 0.437488
Target:  5'- aGGgCUGGCgCCgGGCCGCgCCCCcGGCc -3'
miRNA:   3'- -UCgGGCUGgGGgUCGGCG-GGGGuUUG- -5'
28969 3' -64.4 NC_006146.1 + 167821 0.69 0.357417
Target:  5'- uGGCCCG-CCCCCGGgUcUUCCCGGGCu -3'
miRNA:   3'- -UCGGGCuGGGGGUCgGcGGGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 167638 0.71 0.2882
Target:  5'- cGGCUCGugGCCUgC-GCCGUCCCCAGGCc -3'
miRNA:   3'- -UCGGGC--UGGGgGuCGGCGGGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 167517 0.68 0.437488
Target:  5'- aGGgCUGGCgCCgGGCCGCgCCCCcGGCc -3'
miRNA:   3'- -UCgGGCUGgGGgUCGGCG-GGGGuUUG- -5'
28969 3' -64.4 NC_006146.1 + 167157 0.68 0.428181
Target:  5'- gGGaCCC-ACCCCgGGCUgaagggccacgcgGCCCCCAGAg -3'
miRNA:   3'- -UC-GGGcUGGGGgUCGG-------------CGGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 166039 0.67 0.463447
Target:  5'- uGCCUguGGCCCCC-GCCccuGCCCCUAu-- -3'
miRNA:   3'- uCGGG--CUGGGGGuCGG---CGGGGGUuug -5'
28969 3' -64.4 NC_006146.1 + 165692 0.73 0.200017
Target:  5'- aGGaCCUGcACCCCUAGCU-CCCCCAGGCc -3'
miRNA:   3'- -UC-GGGC-UGGGGGUCGGcGGGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 164781 0.68 0.454703
Target:  5'- uGGUCUgGAUCCCCA-CCGCCUCCAc-- -3'
miRNA:   3'- -UCGGG-CUGGGGGUcGGCGGGGGUuug -5'
28969 3' -64.4 NC_006146.1 + 162463 0.68 0.420654
Target:  5'- cAGCUCG-CCCCCgAGCUcuccugGUCCCCAGGg -3'
miRNA:   3'- -UCGGGCuGGGGG-UCGG------CGGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 160228 0.66 0.526913
Target:  5'- uGCCCGcggguaucGCCCCgGGCC-UCCCCGu-- -3'
miRNA:   3'- uCGGGC--------UGGGGgUCGGcGGGGGUuug -5'
28969 3' -64.4 NC_006146.1 + 159758 0.68 0.412384
Target:  5'- uGCCUccguGACCaCCA-CCGCCCCCAggUa -3'
miRNA:   3'- uCGGG----CUGGgGGUcGGCGGGGGUuuG- -5'
28969 3' -64.4 NC_006146.1 + 158116 0.67 0.472278
Target:  5'- cGUCCG-CCCCUgcagGGCCGCgUCCAGGu -3'
miRNA:   3'- uCGGGCuGGGGG----UCGGCGgGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 158041 0.76 0.132979
Target:  5'- uGCCCaGCCaCCCAGCCuCgCCCCAGGCg -3'
miRNA:   3'- uCGGGcUGG-GGGUCGGcG-GGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 157814 0.66 0.517629
Target:  5'- aGGUCCGAguacuCCUCCGcGCUGgCCCCGGAg -3'
miRNA:   3'- -UCGGGCU-----GGGGGU-CGGCgGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 157780 0.67 0.499263
Target:  5'- gAGCCUGcuGCCCCaggagaGGCCGgaCCCCGccuGGCg -3'
miRNA:   3'- -UCGGGC--UGGGGg-----UCGGCg-GGGGU---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.