miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28969 3' -64.4 NC_006146.1 + 114323 0.83 0.044995
Target:  5'- gGGCUCGGCgCCCGGCCGCCCCUGAc- -3'
miRNA:   3'- -UCGGGCUGgGGGUCGGCGGGGGUUug -5'
28969 3' -64.4 NC_006146.1 + 137786 0.76 0.137608
Target:  5'- cGGCCCGgcgaacccgccggcgGCCaCCCGGCUGCCCCaGAGCc -3'
miRNA:   3'- -UCGGGC---------------UGG-GGGUCGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 2070 0.76 0.138619
Target:  5'- cGCCgGugCCCCcgcgaggguccccgGGCCGCCCCgGGGCu -3'
miRNA:   3'- uCGGgCugGGGG--------------UCGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 92091 0.66 0.564617
Target:  5'- cGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28969 3' -64.4 NC_006146.1 + 42704 0.78 0.094013
Target:  5'- uGGCCCGgcgccgcggcGCCCCCcugGGCCGCCUCCcGGCg -3'
miRNA:   3'- -UCGGGC----------UGGGGG---UCGGCGGGGGuUUG- -5'
28969 3' -64.4 NC_006146.1 + 483 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 2346 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 3278 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28969 3' -64.4 NC_006146.1 + 1606 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 33008 0.76 0.13627
Target:  5'- cGGCCCuguccacgggGACCCCCuGCCGgCCCgGGGCg -3'
miRNA:   3'- -UCGGG----------CUGGGGGuCGGCgGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 3470 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 675 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 137541 0.81 0.065031
Target:  5'- cGGCCCGgcggacccaccggcgGCCaCCCGGCUGCCCCgGAGCa -3'
miRNA:   3'- -UCGGGC---------------UGG-GGGUCGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 126876 0.77 0.123539
Target:  5'- aAGCggGGCCCUCGGCCGCCCCCu--- -3'
miRNA:   3'- -UCGggCUGGGGGUCGGCGGGGGuuug -5'
28969 3' -64.4 NC_006146.1 + 137663 0.81 0.065031
Target:  5'- cGGCCCGgcggacccgccggcgGCCaCCCGGCUGCCCCgGAGCa -3'
miRNA:   3'- -UCGGGC---------------UGG-GGGUCGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 136840 0.77 0.111642
Target:  5'- cGGCCCcgugccacggGACCCCCGGCCggcauagGCCCCgGGACc -3'
miRNA:   3'- -UCGGG----------CUGGGGGUCGG-------CGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 158041 0.76 0.132979
Target:  5'- uGCCCaGCCaCCCAGCCuCgCCCCAGGCg -3'
miRNA:   3'- uCGGGcUGG-GGGUCGGcG-GGGGUUUG- -5'
28969 3' -64.4 NC_006146.1 + 1138 0.76 0.138619
Target:  5'- cGCCgGugCCCCcgcgaggguccccgGGCCGCCCCgGGGCu -3'
miRNA:   3'- uCGGgCugGGGG--------------UCGGCGGGGgUUUG- -5'
28969 3' -64.4 NC_006146.1 + 115873 0.8 0.066031
Target:  5'- cGGcCCCGACCCCCAucccGcCCGCCCCCAu-- -3'
miRNA:   3'- -UC-GGGCUGGGGGU----C-GGCGGGGGUuug -5'
28969 3' -64.4 NC_006146.1 + 1414 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.