Results 21 - 40 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 132967 | 0.66 | 0.880874 |
Target: 5'- --aUCUcuGGGUCCUCGGGGGgcGGuGGa -3' miRNA: 3'- ugcAGGucCCCAGGAGCUCCU--UCuCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 41852 | 0.66 | 0.866787 |
Target: 5'- cCGUggCCAGGGGcuaccggggCCUCGu-GAAGAGGu -3' miRNA: 3'- uGCA--GGUCCCCa--------GGAGCucCUUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 90196 | 0.66 | 0.866787 |
Target: 5'- -aGUgCAGGGGgCagagGGGGAAGAGGa -3' miRNA: 3'- ugCAgGUCCCCaGgag-CUCCUUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 44106 | 0.67 | 0.859443 |
Target: 5'- aACcUCCAGGccccGGcugCCcggCGAGGAGGGGGg -3' miRNA: 3'- -UGcAGGUCC----CCa--GGa--GCUCCUUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 138646 | 0.67 | 0.859443 |
Target: 5'- -gGUCUGGGGGUUCUau-GGuGGGAGGa -3' miRNA: 3'- ugCAGGUCCCCAGGAgcuCC-UUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 146956 | 0.67 | 0.856451 |
Target: 5'- ---cCCGGGGGgaaagucgcccgcCCUUGGGGcAGGAGGg -3' miRNA: 3'- ugcaGGUCCCCa------------GGAGCUCC-UUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 47673 | 0.67 | 0.851906 |
Target: 5'- gGCGgCCAGGG--UCUCGuGGAuGGAGGa -3' miRNA: 3'- -UGCaGGUCCCcaGGAGCuCCU-UCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 2584 | 0.67 | 0.851906 |
Target: 5'- gACGUuuGGaGGG-CgUCGAauaGGGAGAGGg -3' miRNA: 3'- -UGCAggUC-CCCaGgAGCU---CCUUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 133060 | 0.67 | 0.836276 |
Target: 5'- gGCGUCUccaGGGuGGUUC-CGGGuGggGGGGu -3' miRNA: 3'- -UGCAGG---UCC-CCAGGaGCUC-CuuCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 45062 | 0.67 | 0.819948 |
Target: 5'- ---cCUAGGGGcggcugaggugCCUCGuGGGGAGAGGg -3' miRNA: 3'- ugcaGGUCCCCa----------GGAGC-UCCUUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 123330 | 0.67 | 0.819948 |
Target: 5'- gACGUCugcggggccguCAGGGGUCUcgcCGAGGGAGcucuGGc -3' miRNA: 3'- -UGCAG-----------GUCCCCAGGa--GCUCCUUCu---CC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 11000 | 0.68 | 0.802978 |
Target: 5'- cCGgugaCGGGGGUCUUCuuuGAcGGAGGGGGu -3' miRNA: 3'- uGCag--GUCCCCAGGAG---CU-CCUUCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 170671 | 0.68 | 0.793393 |
Target: 5'- cGCGggggaggCCAGGGGcgCCcCGGGGAccgucgcGGGGGc -3' miRNA: 3'- -UGCa------GGUCCCCa-GGaGCUCCU-------UCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 141573 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 169233 | 0.68 | 0.776453 |
Target: 5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3' miRNA: 3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 168301 | 0.68 | 0.776453 |
Target: 5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3' miRNA: 3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 167369 | 0.68 | 0.776453 |
Target: 5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3' miRNA: 3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 144651 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 156962 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
|||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 153884 | 0.68 | 0.776453 |
Target: 5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3' miRNA: 3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home