Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28969 | 5' | -57.7 | NC_006146.1 | + | 2584 | 0.67 | 0.851906 |
Target: 5'- gACGUuuGGaGGG-CgUCGAauaGGGAGAGGg -3' miRNA: 3'- -UGCAggUC-CCCaGgAGCU---CCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 11000 | 0.68 | 0.802978 |
Target: 5'- cCGgugaCGGGGGUCUUCuuuGAcGGAGGGGGu -3' miRNA: 3'- uGCag--GUCCCCAGGAG---CU-CCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 14254 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 15217 | 0.71 | 0.651777 |
Target: 5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3' miRNA: 3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 17332 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 18295 | 0.71 | 0.651777 |
Target: 5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3' miRNA: 3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 19705 | 0.71 | 0.651777 |
Target: 5'- uGCGUCCucuGGUCCacgGGGGAGGAGGc -3' miRNA: 3'- -UGCAGGuccCCAGGag-CUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 20410 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 21373 | 0.71 | 0.651777 |
Target: 5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3' miRNA: 3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 23488 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 24451 | 0.71 | 0.651777 |
Target: 5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3' miRNA: 3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 26566 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 27529 | 0.71 | 0.651777 |
Target: 5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3' miRNA: 3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 29644 | 1.09 | 0.00271 |
Target: 5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3' miRNA: 3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 34077 | 0.71 | 0.62201 |
Target: 5'- cACGgggCCGGGGGUCC-CGGGGGGcAGc -3' miRNA: 3'- -UGCa--GGUCCCCAGGaGCUCCUUcUCc -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 41047 | 0.77 | 0.30128 |
Target: 5'- cCGUCCgcggcggcccuGGGGG-CCUCGGGGuGGAGGg -3' miRNA: 3'- uGCAGG-----------UCCCCaGGAGCUCCuUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 41109 | 0.74 | 0.458448 |
Target: 5'- gGCGUgCAGGGccuccacuuuaggGUCC-CGGGGGAGGGGc -3' miRNA: 3'- -UGCAgGUCCC-------------CAGGaGCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 41852 | 0.66 | 0.866787 |
Target: 5'- cCGUggCCAGGGGcuaccggggCCUCGu-GAAGAGGu -3' miRNA: 3'- uGCA--GGUCCCCa--------GGAGCucCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 43599 | 0.66 | 0.894129 |
Target: 5'- gGCGggaggCCGGgucGGGUCg--GGGGAAGAGGg -3' miRNA: 3'- -UGCa----GGUC---CCCAGgagCUCCUUCUCC- -5' |
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28969 | 5' | -57.7 | NC_006146.1 | + | 44106 | 0.67 | 0.859443 |
Target: 5'- aACcUCCAGGccccGGcugCCcggCGAGGAGGGGGg -3' miRNA: 3'- -UGcAGGUCC----CCa--GGa--GCUCCUUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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