miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28969 5' -57.7 NC_006146.1 + 64102 0.8 0.228444
Target:  5'- ---aCCuGGGGUCCUCGAGGAuggcacggguGGAGGa -3'
miRNA:   3'- ugcaGGuCCCCAGGAGCUCCU----------UCUCC- -5'
28969 5' -57.7 NC_006146.1 + 153884 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28969 5' -57.7 NC_006146.1 + 123330 0.67 0.819948
Target:  5'- gACGUCugcggggccguCAGGGGUCUcgcCGAGGGAGcucuGGc -3'
miRNA:   3'- -UGCAG-----------GUCCCCAGGa--GCUCCUUCu---CC- -5'
28969 5' -57.7 NC_006146.1 + 140046 0.66 0.900436
Target:  5'- cACGUCCcuGcGUUCUgGuGGAGGAGGu -3'
miRNA:   3'- -UGCAGGucCcCAGGAgCuCCUUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 116306 0.71 0.621017
Target:  5'- gGCGcCCccGcGGUCCUCuccccaaGAGGAGGAGGg -3'
miRNA:   3'- -UGCaGGucC-CCAGGAG-------CUCCUUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 161512 0.71 0.631934
Target:  5'- -gGUCacaccccaAGGGGUCCUCGGGGGcAGAu- -3'
miRNA:   3'- ugCAGg-------UCCCCAGGAGCUCCU-UCUcc -5'
28969 5' -57.7 NC_006146.1 + 19705 0.71 0.651777
Target:  5'- uGCGUCCucuGGUCCacgGGGGAGGAGGc -3'
miRNA:   3'- -UGCAGGuccCCAGGag-CUCCUUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 107548 0.7 0.670574
Target:  5'- gUGcCCAGGGGUCCcagggcuUCGuGGAAGAa- -3'
miRNA:   3'- uGCaGGUCCCCAGG-------AGCuCCUUCUcc -5'
28969 5' -57.7 NC_006146.1 + 139490 0.69 0.739425
Target:  5'- cACGgcacCCGGGGGggugCCUgGuguuuaguAGGAGGAGGu -3'
miRNA:   3'- -UGCa---GGUCCCCa---GGAgC--------UCCUUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 150806 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28969 5' -57.7 NC_006146.1 + 141573 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28969 5' -57.7 NC_006146.1 + 105352 0.7 0.700989
Target:  5'- gAC-UCCAcggacGGGGagaucucuUCCUCuGAGGAGGAGGa -3'
miRNA:   3'- -UGcAGGU-----CCCC--------AGGAG-CUCCUUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 41047 0.77 0.30128
Target:  5'- cCGUCCgcggcggcccuGGGGG-CCUCGGGGuGGAGGg -3'
miRNA:   3'- uGCAGG-----------UCCCCaGGAGCUCCuUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 144651 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28969 5' -57.7 NC_006146.1 + 41109 0.74 0.458448
Target:  5'- gGCGUgCAGGGccuccacuuuaggGUCC-CGGGGGAGGGGc -3'
miRNA:   3'- -UGCAgGUCCC-------------CAGGaGCUCCUUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 44751 0.7 0.67156
Target:  5'- gGC-UCCAaucGGGcUCUCGGGGGAGAGGg -3'
miRNA:   3'- -UGcAGGUc--CCCaGGAGCUCCUUCUCC- -5'
28969 5' -57.7 NC_006146.1 + 147728 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28969 5' -57.7 NC_006146.1 + 156962 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28969 5' -57.7 NC_006146.1 + 102378 0.72 0.582451
Target:  5'- -gGUCUccGGGUCCUCGGGGAgcuGGuGGu -3'
miRNA:   3'- ugCAGGucCCCAGGAGCUCCU---UCuCC- -5'
28969 5' -57.7 NC_006146.1 + 78825 0.71 0.651777
Target:  5'- cGCGUCCAGGcagCCgugucCGGGGGAGAGa -3'
miRNA:   3'- -UGCAGGUCCccaGGa----GCUCCUUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.