Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 12923 | 0.66 | 0.978901 |
Target: 5'- cCUCCGUcccGGGAAGguUCG-GGAGUGg- -3' miRNA: 3'- -GGGGUAau-CCCUUC--AGCuCCUCACau -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 128477 | 0.66 | 0.978901 |
Target: 5'- cCUCCGUcccGGGAAGguUCG-GGAGUGg- -3' miRNA: 3'- -GGGGUAau-CCCUUC--AGCuCCUCACau -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 5131 | 0.66 | 0.976462 |
Target: 5'- aUCCCA--AGGGAucgGGUCGuGGGGgagGUc -3' miRNA: 3'- -GGGGUaaUCCCU---UCAGCuCCUCa--CAu -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 120685 | 0.66 | 0.976462 |
Target: 5'- aUCCCA--AGGGAucgGGUCGuGGGGgagGUc -3' miRNA: 3'- -GGGGUaaUCCCU---UCAGCuCCUCa--CAu -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 7831 | 0.69 | 0.906212 |
Target: 5'- uCCCCgg-GGGGAGGguuaaUCGGGGAG-GUc -3' miRNA: 3'- -GGGGuaaUCCCUUC-----AGCUCCUCaCAu -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 123385 | 0.69 | 0.906212 |
Target: 5'- uCCCCgg-GGGGAGGguuaaUCGGGGAG-GUc -3' miRNA: 3'- -GGGGuaaUCCCUUC-----AGCUCCUCaCAu -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 11789 | 0.7 | 0.871241 |
Target: 5'- aCCCGUgagAGGGGAuGggUGAGuGAGUGUAg -3' miRNA: 3'- gGGGUAa--UCCCUU-Ca-GCUC-CUCACAU- -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 127343 | 0.7 | 0.871241 |
Target: 5'- aCCCGUgagAGGGGAuGggUGAGuGAGUGUAg -3' miRNA: 3'- gGGGUAa--UCCCUU-Ca-GCUC-CUCACAU- -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 16624 | 0.72 | 0.785108 |
Target: 5'- cCCCCA-UGGGGGAGcCGuAGGGGUa-- -3' miRNA: 3'- -GGGGUaAUCCCUUCaGC-UCCUCAcau -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 132179 | 0.72 | 0.785108 |
Target: 5'- cCCCCA-UGGGGGAGcCGuAGGGGUa-- -3' miRNA: 3'- -GGGGUaAUCCCUUCaGC-UCCUCAcau -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 60443 | 0.73 | 0.699041 |
Target: 5'- aCCCGggcgGGGGAAGUggacggugucgugcaCGGGGGGUGUc -3' miRNA: 3'- gGGGUaa--UCCCUUCA---------------GCUCCUCACAu -5' |
|||||||
2897 | 3' | -52.4 | NC_001493.1 | + | 21158 | 1.09 | 0.005797 |
Target: 5'- uCCCCAUUAGGGAAGUCGAGGAGUGUAu -3' miRNA: 3'- -GGGGUAAUCCCUUCAGCUCCUCACAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home