Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2897 | 5' | -59.6 | NC_001493.1 | + | 92354 | 0.67 | 0.594795 |
Target: 5'- gUCUC-CCCCgggaUGUUUUCCucgacuguACGGGGAUg -3' miRNA: 3'- aAGAGcGGGG----ACAGAAGG--------UGCCCCUA- -5' |
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2897 | 5' | -59.6 | NC_001493.1 | + | 48260 | 0.67 | 0.64594 |
Target: 5'- -cCUCGCCgCUGUCgaUCGCGGGa-- -3' miRNA: 3'- aaGAGCGGgGACAGaaGGUGCCCcua -5' |
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2897 | 5' | -59.6 | NC_001493.1 | + | 21121 | 1.04 | 0.002269 |
Target: 5'- gUUCUCGCCCCUGUCUUCCACGGGGAUg -3' miRNA: 3'- -AAGAGCGGGGACAGAAGGUGCCCCUA- -5' |
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2897 | 5' | -59.6 | NC_001493.1 | + | 133829 | 0.67 | 0.625459 |
Target: 5'- gUUCUC-CCCgCUGUCcgCCACGGGa-- -3' miRNA: 3'- -AAGAGcGGG-GACAGaaGGUGCCCcua -5' |
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2897 | 5' | -59.6 | NC_001493.1 | + | 18275 | 0.67 | 0.625459 |
Target: 5'- gUUCUC-CCCgCUGUCcgCCACGGGa-- -3' miRNA: 3'- -AAGAGcGGG-GACAGaaGGUGCCCcua -5' |
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2897 | 5' | -59.6 | NC_001493.1 | + | 46717 | 0.67 | 0.645939 |
Target: 5'- cUgUCGCCCCUGUCgaggUCCAUGauguacguGGAUc -3' miRNA: 3'- aAgAGCGGGGACAGa---AGGUGCc-------CCUA- -5' |
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2897 | 5' | -59.6 | NC_001493.1 | + | 80994 | 0.66 | 0.696801 |
Target: 5'- -cCUCGUCUgaGUCUuuuUCCugGGGGu- -3' miRNA: 3'- aaGAGCGGGgaCAGA---AGGugCCCCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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