miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28970 5' -55.8 NC_006146.1 + 101947 0.66 0.915415
Target:  5'- cUCUGCCcUGCcccCUGGCUaggggCUCCGGGCu -3'
miRNA:   3'- aAGAUGGaGUGa--GAUCGG-----GAGGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 144351 0.66 0.915415
Target:  5'- -cUUGCCcCACUac-GCCCaCCAGGCu -3'
miRNA:   3'- aaGAUGGaGUGAgauCGGGaGGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 90446 0.66 0.909425
Target:  5'- -aCUGCCUCcucCUCUaccucGGCCuCUCCcucGGCu -3'
miRNA:   3'- aaGAUGGAGu--GAGA-----UCGG-GAGGu--CCG- -5'
28970 5' -55.8 NC_006146.1 + 147517 0.66 0.909425
Target:  5'- aUCUACCcCAg-CUGcGUCUUCCAGGUg -3'
miRNA:   3'- aAGAUGGaGUgaGAU-CGGGAGGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 88326 0.66 0.909425
Target:  5'- gUUUGCCUUAUggaauGCUCUCCcAGGCu -3'
miRNA:   3'- aAGAUGGAGUGagau-CGGGAGG-UCCG- -5'
28970 5' -55.8 NC_006146.1 + 127424 0.66 0.903194
Target:  5'- cUCgcaUUCGCUCcaGGCCCUCCgagaAGGCc -3'
miRNA:   3'- aAGaugGAGUGAGa-UCGGGAGG----UCCG- -5'
28970 5' -55.8 NC_006146.1 + 155010 0.66 0.903194
Target:  5'- --gUugCUgGCUCgaggccagcgAGCCCUCC-GGCa -3'
miRNA:   3'- aagAugGAgUGAGa---------UCGGGAGGuCCG- -5'
28970 5' -55.8 NC_006146.1 + 84563 0.66 0.903194
Target:  5'- aUCcACCUcCACcaauggCUGGCCUucaucagcuUCCGGGCa -3'
miRNA:   3'- aAGaUGGA-GUGa-----GAUCGGG---------AGGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 99274 0.66 0.902558
Target:  5'- ---gACCUgGCUgcgGGCCCUCCAccacuacGGCa -3'
miRNA:   3'- aagaUGGAgUGAga-UCGGGAGGU-------CCG- -5'
28970 5' -55.8 NC_006146.1 + 62583 0.66 0.896726
Target:  5'- cUCUuCCUCGCgagCUgaacggccaggGGCCuCUCCGGcGCg -3'
miRNA:   3'- aAGAuGGAGUGa--GA-----------UCGG-GAGGUC-CG- -5'
28970 5' -55.8 NC_006146.1 + 126432 0.66 0.896726
Target:  5'- cUC-ACCUCGC-CcGGCagugaCUCCGGGCc -3'
miRNA:   3'- aAGaUGGAGUGaGaUCGg----GAGGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 62817 0.66 0.896726
Target:  5'- -cCUGCCUCuCUUguGCCUguggcCCAGGCu -3'
miRNA:   3'- aaGAUGGAGuGAGauCGGGa----GGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 33386 0.66 0.890022
Target:  5'- -gCUGCCcCGCUCcggguggggggUGGCCCgCCuGGGCa -3'
miRNA:   3'- aaGAUGGaGUGAG-----------AUCGGGaGG-UCCG- -5'
28970 5' -55.8 NC_006146.1 + 99511 0.66 0.889339
Target:  5'- ---gGCUUCcgcagcaGgUCUGGCCCUgaCCAGGCg -3'
miRNA:   3'- aagaUGGAG-------UgAGAUCGGGA--GGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 133036 0.67 0.883088
Target:  5'- cUCUACugCUCGCcggguacgUCUGGCgUCUCCAGGg -3'
miRNA:   3'- aAGAUG--GAGUG--------AGAUCG-GGAGGUCCg -5'
28970 5' -55.8 NC_006146.1 + 32062 0.67 0.875926
Target:  5'- aUUCc-CCUCGcCUCUAaCCCugUCCGGGCg -3'
miRNA:   3'- -AAGauGGAGU-GAGAUcGGG--AGGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 67215 0.67 0.860942
Target:  5'- ---gGCCggUCGC-CUGGCCggCCAGGCa -3'
miRNA:   3'- aagaUGG--AGUGaGAUCGGgaGGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 155068 0.67 0.860942
Target:  5'- cUCUAUCcaaUCGCUC-GGCUCgaugCCGGGCc -3'
miRNA:   3'- aAGAUGG---AGUGAGaUCGGGa---GGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 65188 0.67 0.853131
Target:  5'- cUCUuggaGCCcuaggCGCUCUgggGGCCCUgggagcCCGGGCg -3'
miRNA:   3'- aAGA----UGGa----GUGAGA---UCGGGA------GGUCCG- -5'
28970 5' -55.8 NC_006146.1 + 100256 0.67 0.853131
Target:  5'- ---gGCCUCAUcuUCcAGCCCUCUucccGGCg -3'
miRNA:   3'- aagaUGGAGUG--AGaUCGGGAGGu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.