miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28972 5' -61.2 NC_006146.1 + 50410 0.66 0.743644
Target:  5'- uCCUCGGCCgccaGGGaCggCAGGCagGCCg -3'
miRNA:   3'- -GGAGUUGGg---CCC-GaaGUCCGggCGGa -5'
28972 5' -61.2 NC_006146.1 + 71957 0.66 0.743644
Target:  5'- gUUUGuCCUGGGCUUCGuGGCgCCGaCCUc -3'
miRNA:   3'- gGAGUuGGGCCCGAAGU-CCG-GGC-GGA- -5'
28972 5' -61.2 NC_006146.1 + 95124 0.66 0.743644
Target:  5'- gCC-CGAguagagcccCCUGGGCUU--GGUCCGCCUg -3'
miRNA:   3'- -GGaGUU---------GGGCCCGAAguCCGGGCGGA- -5'
28972 5' -61.2 NC_006146.1 + 78574 0.66 0.743644
Target:  5'- -aUCAGcugcCCCaGGC--CGGGCCCGCCc -3'
miRNA:   3'- ggAGUU----GGGcCCGaaGUCCGGGCGGa -5'
28972 5' -61.2 NC_006146.1 + 79087 0.66 0.743644
Target:  5'- uCUUCAcaacuGCCCagaaagcuGGGUUUCguaAGGCCCGCg- -3'
miRNA:   3'- -GGAGU-----UGGG--------CCCGAAG---UCCGGGCGga -5'
28972 5' -61.2 NC_006146.1 + 101170 0.66 0.742714
Target:  5'- aCCUUuACCUGGGCUgccuGGCCCuugaaacGCUg -3'
miRNA:   3'- -GGAGuUGGGCCCGAagu-CCGGG-------CGGa -5'
28972 5' -61.2 NC_006146.1 + 7932 0.66 0.734307
Target:  5'- ---gGACCCGGGaaaggGGcGCCCGCCa -3'
miRNA:   3'- ggagUUGGGCCCgaag-UC-CGGGCGGa -5'
28972 5' -61.2 NC_006146.1 + 23140 0.66 0.73149
Target:  5'- gCCgggAGCCUGGGCUucgcuugcacagagUCGcucgcGGCCCGCUa -3'
miRNA:   3'- -GGag-UUGGGCCCGA--------------AGU-----CCGGGCGGa -5'
28972 5' -61.2 NC_006146.1 + 47335 0.66 0.72489
Target:  5'- gCCUCcAgCCGGGC--CAGGCgCCGUUUc -3'
miRNA:   3'- -GGAGuUgGGCCCGaaGUCCG-GGCGGA- -5'
28972 5' -61.2 NC_006146.1 + 3081 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28972 5' -61.2 NC_006146.1 + 57222 0.66 0.72489
Target:  5'- gCCggAGgCCGGGCc-CGGGCCCgaGCCa -3'
miRNA:   3'- -GGagUUgGGCCCGaaGUCCGGG--CGGa -5'
28972 5' -61.2 NC_006146.1 + 1217 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28972 5' -61.2 NC_006146.1 + 2149 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28972 5' -61.2 NC_006146.1 + 125480 0.66 0.72489
Target:  5'- aCUUCAACCCggccgGGGCcUCGcgcuGGCCCaCCg -3'
miRNA:   3'- -GGAGUUGGG-----CCCGaAGU----CCGGGcGGa -5'
28972 5' -61.2 NC_006146.1 + 162338 0.66 0.72489
Target:  5'- gCUgCAGCCCGGGCUgCA-GCUaugagCGCCUu -3'
miRNA:   3'- gGA-GUUGGGCCCGAaGUcCGG-----GCGGA- -5'
28972 5' -61.2 NC_006146.1 + 30203 0.66 0.72489
Target:  5'- --aCAGCCagaGGGCcgCuGcGCCCGCCg -3'
miRNA:   3'- ggaGUUGGg--CCCGaaGuC-CGGGCGGa -5'
28972 5' -61.2 NC_006146.1 + 100698 0.66 0.723944
Target:  5'- cCCUCGgcACCCGGcGCUgCGGGggugggugugggaCCgGCCUc -3'
miRNA:   3'- -GGAGU--UGGGCC-CGAaGUCC-------------GGgCGGA- -5'
28972 5' -61.2 NC_006146.1 + 16126 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28972 5' -61.2 NC_006146.1 + 13048 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28972 5' -61.2 NC_006146.1 + 78661 0.66 0.715399
Target:  5'- cCCagcagCAGCCaCaGGC--CGGGCCCGCCc -3'
miRNA:   3'- -GGa----GUUGG-GcCCGaaGUCCGGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.