Results 21 - 40 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28973 | 3' | -62.9 | NC_006146.1 | + | 69472 | 0.66 | 0.631188 |
Target: 5'- --cGGCUuaACcaggauGCCCugcauGGCCAGGCCc -3' miRNA: 3'- gcuCCGGagUGu-----CGGGu----CCGGUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 167273 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 49999 | 0.66 | 0.631188 |
Target: 5'- aGAGGCCgucggaggcgaUCcgguugauGCAGCCgGGGUCgAGGCg -3' miRNA: 3'- gCUCCGG-----------AG--------UGUCGGgUCCGG-UCCGg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 119039 | 0.66 | 0.631188 |
Target: 5'- ----uCUUCAUccccauccccgGGCUCGGGCCAGGCCc -3' miRNA: 3'- gcuccGGAGUG-----------UCGGGUCCGGUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 169137 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 168205 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 8510 | 0.66 | 0.631188 |
Target: 5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3' miRNA: 3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 32911 | 0.66 | 0.630212 |
Target: 5'- gGGGGCg-CACcccccaccccgccGGCCCccgggAGGCCcGGCCg -3' miRNA: 3'- gCUCCGgaGUG-------------UCGGG-----UCCGGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 156356 | 0.66 | 0.630212 |
Target: 5'- aGcGGCCcaGCAGCuCCAGGgcccgguCCAGGCUc -3' miRNA: 3'- gCuCCGGagUGUCG-GGUCC-------GGUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 53867 | 0.66 | 0.630212 |
Target: 5'- gCGAcgcuGGCCcucagCGCccccguagggcguAGCCCAGGUCcaGGGCCc -3' miRNA: 3'- -GCU----CCGGa----GUG-------------UCGGGUCCGG--UCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 34776 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 55172 | 0.66 | 0.621438 |
Target: 5'- gGGGGUgacCGCGuCCCAGGCUGcGGCCg -3' miRNA: 3'- gCUCCGga-GUGUcGGGUCCGGU-CCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 34311 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 34404 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 34590 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 116037 | 0.66 | 0.621438 |
Target: 5'- -aAGGCCUcCACGGCCCGcuGCUGGGg- -3' miRNA: 3'- gcUCCGGA-GUGUCGGGUc-CGGUCCgg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 92874 | 0.66 | 0.621438 |
Target: 5'- --cGGCCaCG-AGCCCAGGUaccugcUAGGCCa -3' miRNA: 3'- gcuCCGGaGUgUCGGGUCCG------GUCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 33382 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 51852 | 0.66 | 0.621438 |
Target: 5'- uCGGGGCCUgGCccgAGCCCGGGgaUGGGg- -3' miRNA: 3'- -GCUCCGGAgUG---UCGGGUCCg-GUCCgg -5' |
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28973 | 3' | -62.9 | NC_006146.1 | + | 159541 | 0.66 | 0.621438 |
Target: 5'- ---uGCCUgacgCGCAGCgCCuGcGCCAGGCCc -3' miRNA: 3'- gcucCGGA----GUGUCG-GGuC-CGGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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