miRNA display CGI


Results 81 - 100 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 5' -53 NC_006146.1 + 162472 0.66 0.982899
Target:  5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3'
miRNA:   3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 55527 0.66 0.982899
Target:  5'- gCGGCCAGGgCCUccAGCUcc--GCCg -3'
miRNA:   3'- gGCCGGUCCgGGGuaUUGAuuucUGG- -5'
28973 5' -53 NC_006146.1 + 63438 0.66 0.980867
Target:  5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3'
miRNA:   3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5'
28973 5' -53 NC_006146.1 + 115852 0.66 0.978659
Target:  5'- aCGGCCgccuguggcAGGCCCCG--GCccc-GACCc -3'
miRNA:   3'- gGCCGG---------UCCGGGGUauUGauuuCUGG- -5'
28973 5' -53 NC_006146.1 + 123551 0.66 0.984764
Target:  5'- aCGGU--GGCCCCGUAGCacgugccGAGGAUg -3'
miRNA:   3'- gGCCGguCCGGGGUAUUGa------UUUCUGg -5'
28973 5' -53 NC_006146.1 + 19537 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28973 5' -53 NC_006146.1 + 57975 0.66 0.986307
Target:  5'- -aGGaguucuuCCAGGCgCaCCAggacgAGCUGGAGGCCc -3'
miRNA:   3'- ggCC-------GGUCCG-G-GGUa----UUGAUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 169735 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 99125 0.66 0.9817
Target:  5'- uCCGGCCucaggcgucuccacaGgGGCUCCAgcgaccggcaggUGGCgGAGGGCCa -3'
miRNA:   3'- -GGCCGG---------------U-CCGGGGU------------AUUGaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 60730 0.66 0.978659
Target:  5'- aCCGGCgCugAGGCCCUG-GAC-AGAGAUCc -3'
miRNA:   3'- -GGCCG-G--UCCGGGGUaUUGaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 61611 0.66 0.984764
Target:  5'- gCGGCCGGGgccgagaucccUCCCA--GCUAc-GACCu -3'
miRNA:   3'- gGCCGGUCC-----------GGGGUauUGAUuuCUGG- -5'
28973 5' -53 NC_006146.1 + 142690 0.66 0.984764
Target:  5'- uCCGGCCgccggaGGGCucuaaCCCGUcuCUGuccacuagagGGGACCg -3'
miRNA:   3'- -GGCCGG------UCCG-----GGGUAuuGAU----------UUCUGG- -5'
28973 5' -53 NC_006146.1 + 39075 0.66 0.98647
Target:  5'- gCCGGCCuccGGUCUgGg----GAAGGCCa -3'
miRNA:   3'- -GGCCGGu--CCGGGgUauugaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 90885 0.66 0.984764
Target:  5'- cCCGaGCCuGGCCCUc-AACcu-GGGCCc -3'
miRNA:   3'- -GGC-CGGuCCGGGGuaUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 169413 0.66 0.976268
Target:  5'- -aGGCC-GGCUgCCAUGGuCaGGAGGCCa -3'
miRNA:   3'- ggCCGGuCCGG-GGUAUU-GaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28973 5' -53 NC_006146.1 + 10650 0.66 0.976268
Target:  5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3'
miRNA:   3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5'
28973 5' -53 NC_006146.1 + 128754 0.66 0.978659
Target:  5'- uCCGuGCCAGGCCgaCAc-GCUcAGGGACa -3'
miRNA:   3'- -GGC-CGGUCCGGg-GUauUGA-UUUCUGg -5'
28973 5' -53 NC_006146.1 + 42867 0.66 0.978659
Target:  5'- aCGGUCAGGCagcuCCuguauuUAACUuugcGGGCCg -3'
miRNA:   3'- gGCCGGUCCGg---GGu-----AUUGAuu--UCUGG- -5'
28973 5' -53 NC_006146.1 + 51580 0.66 0.980867
Target:  5'- gCCGGgaGGGgCCCGggggAGCcagAGGGGCCa -3'
miRNA:   3'- -GGCCggUCCgGGGUa---UUGa--UUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.