miRNA display CGI


Results 81 - 100 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 5' -53 NC_006146.1 + 53514 0.74 0.694972
Target:  5'- uCUGGCUgcGGGCCgCGcGugUGAAGGCCg -3'
miRNA:   3'- -GGCCGG--UCCGGgGUaUugAUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 38154 0.74 0.699023
Target:  5'- gCGGCauccGGCCCCGgagaaccggggcuACUGGGGACCa -3'
miRNA:   3'- gGCCGgu--CCGGGGUau-----------UGAUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 124276 0.74 0.705081
Target:  5'- cUCGGCCcccaAGGCCCU--GAUgGAAGACCu -3'
miRNA:   3'- -GGCCGG----UCCGGGGuaUUGaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 93604 0.74 0.705081
Target:  5'- aCCcGCCGGGCUCCuggGGCUGcuguccuccccgGAGGCCg -3'
miRNA:   3'- -GGcCGGUCCGGGGua-UUGAU------------UUCUGG- -5'
28973 5' -53 NC_006146.1 + 151928 0.74 0.715128
Target:  5'- uCCGGCCcuGCCgCCcucuCUAGGGGCCg -3'
miRNA:   3'- -GGCCGGucCGG-GGuauuGAUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 56129 0.74 0.715128
Target:  5'- gUGGCCgcGGGCCCCGaGACcgAGAGcACCu -3'
miRNA:   3'- gGCCGG--UCCGGGGUaUUGa-UUUC-UGG- -5'
28973 5' -53 NC_006146.1 + 46615 0.74 0.715128
Target:  5'- gUCGGCCAGGUcuUCCAUcagGGCcuUGGGGGCCg -3'
miRNA:   3'- -GGCCGGUCCG--GGGUA---UUG--AUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 40678 0.74 0.725103
Target:  5'- aCGGCCuGGCCaCCAcc-CUGAGGugCu -3'
miRNA:   3'- gGCCGGuCCGG-GGUauuGAUUUCugG- -5'
28973 5' -53 NC_006146.1 + 136860 0.73 0.734012
Target:  5'- cCCGGCCggcauAGGCCCCG-------GGACCa -3'
miRNA:   3'- -GGCCGG-----UCCGGGGUauugauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 137889 0.73 0.734998
Target:  5'- gCCGGCaggGGGuCCCCGUGGac-AGGGCCg -3'
miRNA:   3'- -GGCCGg--UCC-GGGGUAUUgauUUCUGG- -5'
28973 5' -53 NC_006146.1 + 73431 0.73 0.734998
Target:  5'- -aGGCCGGGCCCCuUGGCaccgGAuGACa -3'
miRNA:   3'- ggCCGGUCCGGGGuAUUGa---UUuCUGg -5'
28973 5' -53 NC_006146.1 + 147445 0.73 0.734998
Target:  5'- aCGGCCAgGGCCUCGUAGgccGAGACg -3'
miRNA:   3'- gGCCGGU-CCGGGGUAUUgauUUCUGg -5'
28973 5' -53 NC_006146.1 + 125901 0.73 0.744802
Target:  5'- aCGGUgGGGCCUCAccgAGCUGGAGAg- -3'
miRNA:   3'- gGCCGgUCCGGGGUa--UUGAUUUCUgg -5'
28973 5' -53 NC_006146.1 + 110814 0.73 0.744802
Target:  5'- aCCGGCCcGGCgauugCCCGUAGCUccacGGGACg -3'
miRNA:   3'- -GGCCGGuCCG-----GGGUAUUGAu---UUCUGg -5'
28973 5' -53 NC_006146.1 + 137018 0.73 0.744802
Target:  5'- -aGGCCGGGCacaCCCcgGGgaGGAGGCCg -3'
miRNA:   3'- ggCCGGUCCG---GGGuaUUgaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 39255 0.73 0.748696
Target:  5'- cUCGGCCcugaggaacggguguGGGCCCCG-GACUcGAGACg -3'
miRNA:   3'- -GGCCGG---------------UCCGGGGUaUUGAuUUCUGg -5'
28973 5' -53 NC_006146.1 + 73537 0.73 0.754506
Target:  5'- aUGGCCAGGCUCCGgAGCUccccGGGCg -3'
miRNA:   3'- gGCCGGUCCGGGGUaUUGAuu--UCUGg -5'
28973 5' -53 NC_006146.1 + 47674 0.73 0.754506
Target:  5'- gCGGCCAgGGUCUCGUGGaugGAGGACUu -3'
miRNA:   3'- gGCCGGU-CCGGGGUAUUga-UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 72577 0.73 0.754506
Target:  5'- gCCGcGCCcGGCCCCGUGcCaGAcGGCCa -3'
miRNA:   3'- -GGC-CGGuCCGGGGUAUuGaUUuCUGG- -5'
28973 5' -53 NC_006146.1 + 14813 0.73 0.758357
Target:  5'- gCCGGCCGGGCCggaggagggcacgguCUcgGGCccGGGGCCg -3'
miRNA:   3'- -GGCCGGUCCGG---------------GGuaUUGauUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.