miRNA display CGI


Results 81 - 100 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 5' -53 NC_006146.1 + 7695 0.66 0.980867
Target:  5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3'
miRNA:   3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5'
28973 5' -53 NC_006146.1 + 169735 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 167871 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 63438 0.66 0.980867
Target:  5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3'
miRNA:   3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5'
28973 5' -53 NC_006146.1 + 168803 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 151190 0.66 0.980867
Target:  5'- gCCGGCCuccucCCCCGUGGaccaGAGGACg -3'
miRNA:   3'- -GGCCGGucc--GGGGUAUUga--UUUCUGg -5'
28973 5' -53 NC_006146.1 + 61438 0.66 0.980867
Target:  5'- aCGGCCGGGCUgaUCAgcuUUGAGGugUc -3'
miRNA:   3'- gGCCGGUCCGG--GGUauuGAUUUCugG- -5'
28973 5' -53 NC_006146.1 + 51580 0.66 0.980867
Target:  5'- gCCGGgaGGGgCCCGggggAGCcagAGGGGCCa -3'
miRNA:   3'- -GGCCggUCCgGGGUa---UUGa--UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 122554 0.66 0.980867
Target:  5'- gCCGGCCcgcuGGCCa---GACUGGAcGCCu -3'
miRNA:   3'- -GGCCGGu---CCGGgguaUUGAUUUcUGG- -5'
28973 5' -53 NC_006146.1 + 115259 0.66 0.980005
Target:  5'- uCCGGCUgcugcaccccucggGGGCCCUcuucuacGACUAcguguacGAGGCCc -3'
miRNA:   3'- -GGCCGG--------------UCCGGGGua-----UUGAU-------UUCUGG- -5'
28973 5' -53 NC_006146.1 + 60007 0.66 0.979563
Target:  5'- -aGGCCAacgcGGCCCCGUccccgccugcgcccgAGCccGAGACg -3'
miRNA:   3'- ggCCGGU----CCGGGGUA---------------UUGauUUCUGg -5'
28973 5' -53 NC_006146.1 + 158178 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 6658 0.66 0.978659
Target:  5'- gUGGCCcaccAGGCCCCAcugaugguggUAAC-AAuGGCCc -3'
miRNA:   3'- gGCCGG----UCCGGGGU----------AUUGaUUuCUGG- -5'
28973 5' -53 NC_006146.1 + 152021 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 145865 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 161790 0.66 0.978659
Target:  5'- aCCGGCUccacgguggauAGGCUCCcug---GGAGACCc -3'
miRNA:   3'- -GGCCGG-----------UCCGGGGuauugaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 142787 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 155099 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 115852 0.66 0.978659
Target:  5'- aCGGCCgccuguggcAGGCCCCG--GCccc-GACCc -3'
miRNA:   3'- gGCCGG---------UCCGGGGUauUGauuuCUGG- -5'
28973 5' -53 NC_006146.1 + 60730 0.66 0.978659
Target:  5'- aCCGGCgCugAGGCCCUG-GAC-AGAGAUCc -3'
miRNA:   3'- -GGCCG-G--UCCGGGGUaUUGaUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.