miRNA display CGI


Results 101 - 120 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 5' -53 NC_006146.1 + 115852 0.66 0.978659
Target:  5'- aCGGCCgccuguggcAGGCCCCG--GCccc-GACCc -3'
miRNA:   3'- gGCCGG---------UCCGGGGUauUGauuuCUGG- -5'
28973 5' -53 NC_006146.1 + 142787 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 68895 0.66 0.978659
Target:  5'- gCCGGgagacagcCCAGaGCCCC-UAGCaAGGGAgCCa -3'
miRNA:   3'- -GGCC--------GGUC-CGGGGuAUUGaUUUCU-GG- -5'
28973 5' -53 NC_006146.1 + 6658 0.66 0.978659
Target:  5'- gUGGCCcaccAGGCCCCAcugaugguggUAAC-AAuGGCCc -3'
miRNA:   3'- gGCCGG----UCCGGGGU----------AUUGaUUuCUGG- -5'
28973 5' -53 NC_006146.1 + 158178 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 155099 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 145865 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 148943 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 152021 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCaAUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGG-UAUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28973 5' -53 NC_006146.1 + 67799 0.66 0.977961
Target:  5'- gCGGCCAGGCUCUgccccgccucggaaGUAaacaGCUccguGAGGugCg -3'
miRNA:   3'- gGCCGGUCCGGGG--------------UAU----UGA----UUUCugG- -5'
28973 5' -53 NC_006146.1 + 135699 0.66 0.977247
Target:  5'- gUGGCCGGGCCgcugCCGgguccGCUGcccguccuggagcucGGGGCCg -3'
miRNA:   3'- gGCCGGUCCGG----GGUau---UGAU---------------UUCUGG- -5'
28973 5' -53 NC_006146.1 + 158827 0.66 0.977247
Target:  5'- aCGGCCGGGgCCCGgcccucgcaaagcgAGCacauGGGGCUg -3'
miRNA:   3'- gGCCGGUCCgGGGUa-------------UUGau--UUCUGG- -5'
28973 5' -53 NC_006146.1 + 75883 0.66 0.976268
Target:  5'- gUCGG-CGGGCuCCCGUAAUUccAGcACCu -3'
miRNA:   3'- -GGCCgGUCCG-GGGUAUUGAuuUC-UGG- -5'
28973 5' -53 NC_006146.1 + 84531 0.66 0.976268
Target:  5'- gCCGGUaCAGGCgCCGUGGCaggugguuGGGCa -3'
miRNA:   3'- -GGCCG-GUCCGgGGUAUUGauu-----UCUGg -5'
28973 5' -53 NC_006146.1 + 92891 0.66 0.976268
Target:  5'- aCCuGCUAGGCCaCCAccccccguGCUguccagacagaGAGGACCg -3'
miRNA:   3'- -GGcCGGUCCGG-GGUau------UGA-----------UUUCUGG- -5'
28973 5' -53 NC_006146.1 + 10650 0.66 0.976268
Target:  5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3'
miRNA:   3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5'
28973 5' -53 NC_006146.1 + 120182 0.66 0.976268
Target:  5'- cCCGaCCGGGCCCUcgu-CUAu-GACCc -3'
miRNA:   3'- -GGCcGGUCCGGGGuauuGAUuuCUGG- -5'
28973 5' -53 NC_006146.1 + 124505 0.66 0.976268
Target:  5'- cUCGGCCuggucucGGCCCUGgcgaggGAC-GGGGGCCu -3'
miRNA:   3'- -GGCCGGu------CCGGGGUa-----UUGaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 167177 0.66 0.976268
Target:  5'- -gGGCCAcgcGGCCCCc-----AGAGACCc -3'
miRNA:   3'- ggCCGGU---CCGGGGuauugaUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.