miRNA display CGI


Results 81 - 100 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 5' -53 NC_006146.1 + 20121 0.71 0.844036
Target:  5'- gUGGCCcGGCaCCU---GCUGGGGGCCa -3'
miRNA:   3'- gGCCGGuCCG-GGGuauUGAUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 20210 0.69 0.931
Target:  5'- -aGGCCAGGCCCUccgucCUcccuGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGuauu-GAuuu-CUGG- -5'
28973 5' -53 NC_006146.1 + 20251 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28973 5' -53 NC_006146.1 + 20583 0.68 0.953824
Target:  5'- gCCGGCCuGcGCCCgGgcgagGACUAcGAGuCCu -3'
miRNA:   3'- -GGCCGGuC-CGGGgUa----UUGAU-UUCuGG- -5'
28973 5' -53 NC_006146.1 + 21093 0.68 0.949733
Target:  5'- cCCGgaGCCuguuuguGGCCCCcaucuccCUGGAGGCCg -3'
miRNA:   3'- -GGC--CGGu------CCGGGGuauu---GAUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 21187 0.67 0.967923
Target:  5'- uCCaGGcCCGGGCCCCcagguCUc-GGGCCa -3'
miRNA:   3'- -GG-CC-GGUCCGGGGuauu-GAuuUCUGG- -5'
28973 5' -53 NC_006146.1 + 21634 0.68 0.958057
Target:  5'- cCCGGCCuacgcggagcggcacGGCauuCCCGUGGCcAuuGACCa -3'
miRNA:   3'- -GGCCGGu--------------CCG---GGGUAUUGaUuuCUGG- -5'
28973 5' -53 NC_006146.1 + 21838 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28973 5' -53 NC_006146.1 + 21881 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 22097 0.68 0.953824
Target:  5'- -gGGCgAGGCUggGUGGCUGGgcAGGCCg -3'
miRNA:   3'- ggCCGgUCCGGggUAUUGAUU--UCUGG- -5'
28973 5' -53 NC_006146.1 + 22219 0.68 0.953824
Target:  5'- gUCGGCCuAGGCCCgGgGAgUGGAGGg- -3'
miRNA:   3'- -GGCCGG-UCCGGGgUaUUgAUUUCUgg -5'
28973 5' -53 NC_006146.1 + 22615 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28973 5' -53 NC_006146.1 + 22692 0.68 0.940845
Target:  5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3'
miRNA:   3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5'
28973 5' -53 NC_006146.1 + 22797 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28973 5' -53 NC_006146.1 + 22964 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28973 5' -53 NC_006146.1 + 23288 0.69 0.931
Target:  5'- -aGGCCAGGCCCUccgucCUcccuGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGuauu-GAuuu-CUGG- -5'
28973 5' -53 NC_006146.1 + 23329 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28973 5' -53 NC_006146.1 + 23459 0.66 0.980867
Target:  5'- cUCGGCCuacgAGGCCCU--GGCcgu-GGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGuaUUGauuuCUGG- -5'
28973 5' -53 NC_006146.1 + 24061 0.71 0.835828
Target:  5'- cCCGaGCCAGGCCCgGgcucuacGCUGGcgcGGCCu -3'
miRNA:   3'- -GGC-CGGUCCGGGgUau-----UGAUUu--CUGG- -5'
28973 5' -53 NC_006146.1 + 24265 0.67 0.967923
Target:  5'- uCCaGGcCCGGGCCCCcagguCUc-GGGCCa -3'
miRNA:   3'- -GG-CC-GGUCCGGGGuauu-GAuuUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.