Results 1 - 20 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28973 | 5' | -53 | NC_006146.1 | + | 128754 | 0.66 | 0.978659 |
Target: 5'- uCCGuGCCAGGCCgaCAc-GCUcAGGGACa -3' miRNA: 3'- -GGC-CGGUCCGGg-GUauUGA-UUUCUGg -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 130171 | 0.66 | 0.978659 |
Target: 5'- cCCGGCCGaGUCgUAU--UUAAAGGCCa -3' miRNA: 3'- -GGCCGGUcCGGgGUAuuGAUUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 60007 | 0.66 | 0.979563 |
Target: 5'- -aGGCCAacgcGGCCCCGUccccgccugcgcccgAGCccGAGACg -3' miRNA: 3'- ggCCGGU----CCGGGGUA---------------UUGauUUCUGg -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 151190 | 0.66 | 0.980867 |
Target: 5'- gCCGGCCuccucCCCCGUGGaccaGAGGACg -3' miRNA: 3'- -GGCCGGucc--GGGGUAUUga--UUUCUGg -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 2293 | 0.66 | 0.978659 |
Target: 5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3' miRNA: 3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 138092 | 0.66 | 0.978659 |
Target: 5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3' miRNA: 3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 75883 | 0.66 | 0.976268 |
Target: 5'- gUCGG-CGGGCuCCCGUAAUUccAGcACCu -3' miRNA: 3'- -GGCCgGUCCG-GGGUAUUGAuuUC-UGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 92891 | 0.66 | 0.976268 |
Target: 5'- aCCuGCUAGGCCaCCAccccccguGCUguccagacagaGAGGACCg -3' miRNA: 3'- -GGcCGGUCCGG-GGUau------UGA-----------UUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 161790 | 0.66 | 0.978659 |
Target: 5'- aCCGGCUccacgguggauAGGCUCCcug---GGAGACCc -3' miRNA: 3'- -GGCCGG-----------UCCGGGGuauugaUUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 42867 | 0.66 | 0.978659 |
Target: 5'- aCGGUCAGGCagcuCCuguauuUAACUuugcGGGCCg -3' miRNA: 3'- gGCCGGUCCGg---GGu-----AUUGAuu--UCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 55597 | 0.66 | 0.980867 |
Target: 5'- -aGGUCuGGUCCCAgAGC--AGGGCCu -3' miRNA: 3'- ggCCGGuCCGGGGUaUUGauUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 103869 | 0.66 | 0.986633 |
Target: 5'- cCCGGCCGacugucGGCUCCcgGACacgcggcucacccGGGCCa -3' miRNA: 3'- -GGCCGGU------CCGGGGuaUUGauu----------UCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 61438 | 0.66 | 0.980867 |
Target: 5'- aCGGCCGGGCUgaUCAgcuUUGAGGugUc -3' miRNA: 3'- gGCCGGUCCGG--GGUauuGAUUUCugG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 10650 | 0.66 | 0.976268 |
Target: 5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3' miRNA: 3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 78911 | 0.66 | 0.978659 |
Target: 5'- cCCaGGCCGGGCCCgCcaguGUGAUUGugauGCCu -3' miRNA: 3'- -GG-CCGGUCCGGG-G----UAUUGAUuuc-UGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 34262 | 0.66 | 0.978659 |
Target: 5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3' miRNA: 3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 84531 | 0.66 | 0.976268 |
Target: 5'- gCCGGUaCAGGCgCCGUGGCaggugguuGGGCa -3' miRNA: 3'- -GGCCG-GUCCGgGGUAUUGauu-----UCUGg -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 158827 | 0.66 | 0.977247 |
Target: 5'- aCGGCCGGGgCCCGgcccucgcaaagcgAGCacauGGGGCUg -3' miRNA: 3'- gGCCGGUCCgGGGUa-------------UUGau--UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 135699 | 0.66 | 0.977247 |
Target: 5'- gUGGCCGGGCCgcugCCGgguccGCUGcccguccuggagcucGGGGCCg -3' miRNA: 3'- gGCCGGUCCGG----GGUau---UGAU---------------UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 117874 | 0.66 | 0.978659 |
Target: 5'- gCGGCUgagauGGGCaCCCGaGGCUGGucaucGACCc -3' miRNA: 3'- gGCCGG-----UCCG-GGGUaUUGAUUu----CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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