Results 21 - 40 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28973 | 5' | -53 | NC_006146.1 | + | 35356 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 35077 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 34241 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 33591 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 141797 | 0.76 | 0.602651 |
Target: 5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3' miRNA: 3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 111647 | 0.8 | 0.375898 |
Target: 5'- gUCGGCCAGGCCCUG-AACacccaggcccaUGGAGGCCa -3' miRNA: 3'- -GGCCGGUCCGGGGUaUUG-----------AUUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 34892 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 33498 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 35728 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 33405 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 34984 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 35449 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 34613 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 34334 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 33962 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 33684 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 154109 | 0.76 | 0.602651 |
Target: 5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3' miRNA: 3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 144875 | 0.76 | 0.602651 |
Target: 5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3' miRNA: 3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 40989 | 0.77 | 0.561845 |
Target: 5'- gCCGcGCCGGcGCCCCAgGGCgcagAGAGACa -3' miRNA: 3'- -GGC-CGGUC-CGGGGUaUUGa---UUUCUGg -5' |
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28973 | 5' | -53 | NC_006146.1 | + | 14540 | 0.79 | 0.464052 |
Target: 5'- cCUGGaCCGGGCCCUggAGCUGcuGGGCCg -3' miRNA: 3'- -GGCC-GGUCCGGGGuaUUGAUu-UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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