Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28975 | 3' | -50.4 | NC_006146.1 | + | 108349 | 0.7 | 0.963027 |
Target: 5'- -gGAGCCCCGc-GGACCCAcauGAAc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUuu-CUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 44273 | 0.7 | 0.963027 |
Target: 5'- -cGGGCCCCGggGuguGCCCAccGAc-- -3' miRNA: 3'- gaCUCGGGGCaaCu--UGGGUuuCUuac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 67569 | 0.69 | 0.97227 |
Target: 5'- -cGAGCCCCccuccccguacucGUgGGACCCGgaccccGAGGAUGg -3' miRNA: 3'- gaCUCGGGG-------------CAaCUUGGGU------UUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 169884 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 105876 | 0.69 | 0.972555 |
Target: 5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3' miRNA: 3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 170815 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 168952 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 168020 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 18984 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 25140 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 12828 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 22062 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 15907 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 28218 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 125806 | 0.69 | 0.977832 |
Target: 5'- cCUGAGgCCCGccaGAccaagACCCAGAGGAa- -3' miRNA: 3'- -GACUCgGGGCaa-CU-----UGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 15069 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 27381 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 18147 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 21225 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 24303 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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