Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28975 | 3' | -50.4 | NC_006146.1 | + | 13334 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 15907 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 22062 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 5202 | 0.66 | 0.99718 |
Target: 5'- cCUGGGCCUgGggGAGCU--AGGggUGc -3' miRNA: 3'- -GACUCGGGgCaaCUUGGguUUCuuAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 25646 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 28724 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 168814 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 169746 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 52272 | 0.72 | 0.889431 |
Target: 5'- aCUGGGCCCCGggc-GCCCccacguacuGGAGGAUGu -3' miRNA: 3'- -GACUCGGGGCaacuUGGG---------UUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 12828 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 143290 | 0.7 | 0.951406 |
Target: 5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3' miRNA: 3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 67907 | 0.73 | 0.851385 |
Target: 5'- aCUGGGCCUCGUgGGAgCCGAAGGu-- -3' miRNA: 3'- -GACUCGGGGCAaCUUgGGUUUCUuac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 16412 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 44273 | 0.7 | 0.963027 |
Target: 5'- -cGGGCCCCGggGuguGCCCAccGAc-- -3' miRNA: 3'- gaCUCGGGGCaaCu--UGGGUuuCUuac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 19490 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 159021 | 0.75 | 0.78942 |
Target: 5'- -cGGGCCCCGUUGGugCCAGu----- -3' miRNA: 3'- gaCUCGGGGCAACUugGGUUucuuac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 105876 | 0.69 | 0.972555 |
Target: 5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3' miRNA: 3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 18984 | 0.69 | 0.975296 |
Target: 5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 22568 | 1.08 | 0.011501 |
Target: 5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3' miRNA: 3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' |
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28975 | 3' | -50.4 | NC_006146.1 | + | 167882 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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