Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28975 | 5' | -69.1 | NC_006146.1 | + | 5160 | 0.68 | 0.260462 |
Target: 5'- gGCCGCCa--GGaGGCUCucguGGCCCCUGg -3' miRNA: 3'- -CGGCGGgagCC-CCGGGuc--CCGGGGAU- -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 5235 | 0.76 | 0.071289 |
Target: 5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3' miRNA: 3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 12457 | 0.67 | 0.302921 |
Target: 5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3' miRNA: 3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 12669 | 0.67 | 0.296544 |
Target: 5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3' miRNA: 3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 13105 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 13130 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 13248 | 0.71 | 0.169427 |
Target: 5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3' miRNA: 3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 13370 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 13580 | 0.8 | 0.038184 |
Target: 5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3' miRNA: 3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 13825 | 0.67 | 0.302922 |
Target: 5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3' miRNA: 3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 13938 | 0.69 | 0.243804 |
Target: 5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3' miRNA: 3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 15228 | 0.69 | 0.243804 |
Target: 5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3' miRNA: 3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 15536 | 0.67 | 0.302921 |
Target: 5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3' miRNA: 3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 15748 | 0.67 | 0.296544 |
Target: 5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3' miRNA: 3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 16183 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 16208 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 16326 | 0.71 | 0.169427 |
Target: 5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3' miRNA: 3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 16448 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 16658 | 0.8 | 0.038184 |
Target: 5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3' miRNA: 3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5' |
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28975 | 5' | -69.1 | NC_006146.1 | + | 16903 | 0.67 | 0.302922 |
Target: 5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3' miRNA: 3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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