Results 21 - 40 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28976 | 5' | -55.3 | NC_006146.1 | + | 54435 | 0.66 | 0.944194 |
Target: 5'- -gAGGGUcUCGGAgauuacGCCCgAGAccucgcgaaccGCGUCCa -3' miRNA: 3'- ggUCCCGaAGUCU------CGGG-UCU-----------UGCAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 114347 | 0.66 | 0.944194 |
Target: 5'- cCCAGGGC--CAGcaugcgccuGGUCCGGAGCcucaUCCg -3' miRNA: 3'- -GGUCCCGaaGUC---------UCGGGUCUUGc---AGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 4954 | 0.66 | 0.944194 |
Target: 5'- cCCGGGGaccaGGGGCCacgAGAGCcUCCu -3' miRNA: 3'- -GGUCCCgaagUCUCGGg--UCUUGcAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 66407 | 0.66 | 0.944194 |
Target: 5'- -aGGGGCagCuGGGCCUGGAucuCGUCg -3' miRNA: 3'- ggUCCCGaaGuCUCGGGUCUu--GCAGg -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 156993 | 0.66 | 0.944194 |
Target: 5'- cCCAGGGCgggaugUCGGGGCugCUGGcGGCGgCCu -3' miRNA: 3'- -GGUCCCGa-----AGUCUCG--GGUC-UUGCaGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 129983 | 0.66 | 0.94375 |
Target: 5'- gCAGGGCcuccacUUUAGGGUCCcgggggaGGGGCGUgCg -3' miRNA: 3'- gGUCCCG------AAGUCUCGGG-------UCUUGCAgG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 153090 | 0.66 | 0.941492 |
Target: 5'- aCCAGGGggcgcgaguagcacaUgcucUCGGAGCCCGGGAC--CCu -3' miRNA: 3'- -GGUCCC---------------Ga---AGUCUCGGGUCUUGcaGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 131499 | 0.66 | 0.94011 |
Target: 5'- gCCAGGGaucgaccgggaaAGGGCCCAGggUaaCCg -3' miRNA: 3'- -GGUCCCgaag--------UCUCGGGUCuuGcaGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 75135 | 0.66 | 0.939644 |
Target: 5'- gCCGGGGCcaguaCAGAGUCCAaAAcCGgggCCa -3' miRNA: 3'- -GGUCCCGaa---GUCUCGGGUcUU-GCa--GG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 86330 | 0.66 | 0.939644 |
Target: 5'- gCAGGGuCUugaUCAGGGCCCuc-ACaUCCu -3' miRNA: 3'- gGUCCC-GA---AGUCUCGGGucuUGcAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 53789 | 0.66 | 0.939644 |
Target: 5'- aCgAGGGCcUC--GGCCCGcgcGGCGUCCa -3' miRNA: 3'- -GgUCCCGaAGucUCGGGUc--UUGCAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 130929 | 0.66 | 0.938707 |
Target: 5'- uCCGGGGa---AGAGCCCGccgcccuccuCGUCCu -3' miRNA: 3'- -GGUCCCgaagUCUCGGGUcuu-------GCAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 61698 | 0.66 | 0.93776 |
Target: 5'- aCAGGGCggcaggggccuccUCGGAGCCCuGGugaUCCu -3' miRNA: 3'- gGUCCCGa------------AGUCUCGGGuCUugcAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 160661 | 0.66 | 0.934862 |
Target: 5'- cUCAGGGaggcCUUCAGGGCCggcacaugacCAGGGCcgguagaggcagGUCCg -3' miRNA: 3'- -GGUCCC----GAAGUCUCGG----------GUCUUG------------CAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 110009 | 0.66 | 0.934862 |
Target: 5'- -uGGGGCcUCAGGGCUC----CGUCCu -3' miRNA: 3'- ggUCCCGaAGUCUCGGGucuuGCAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 44746 | 0.66 | 0.934862 |
Target: 5'- gCCGcGGGCggcugugguugUCGGGGCCCGGcgGGCGgggaacCCa -3' miRNA: 3'- -GGU-CCCGa----------AGUCUCGGGUC--UUGCa-----GG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 34066 | 0.66 | 0.934862 |
Target: 5'- cCCGGGGa---GGAGgCCGGGugGgggCCu -3' miRNA: 3'- -GGUCCCgaagUCUCgGGUCUugCa--GG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 4258 | 0.66 | 0.934862 |
Target: 5'- gCCcGGGUccgcguggagaUUCAGAGUgagCAGGACGUCUu -3' miRNA: 3'- -GGuCCCG-----------AAGUCUCGg--GUCUUGCAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 69806 | 0.66 | 0.934862 |
Target: 5'- cCCGGGGacgu-GGGCCU-GGACGUCUc -3' miRNA: 3'- -GGUCCCgaaguCUCGGGuCUUGCAGG- -5' |
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28976 | 5' | -55.3 | NC_006146.1 | + | 100088 | 0.66 | 0.934862 |
Target: 5'- cCCGGGGgg-CAGAgGCgCCGGAucagcuggACGUCUa -3' miRNA: 3'- -GGUCCCgaaGUCU-CG-GGUCU--------UGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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