miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28977 3' -58 NC_006146.1 + 155989 0.66 0.835133
Target:  5'- --cGGUGGCCCccaGGGCCaccgagcGGCUcuucUGCg -3'
miRNA:   3'- aauCCACUGGGag-CCCGGa------CCGA----AUG- -5'
28977 3' -58 NC_006146.1 + 41351 0.66 0.835133
Target:  5'- ----cUGGCCCa-GGGCCUGGCg--- -3'
miRNA:   3'- aauccACUGGGagCCCGGACCGaaug -5'
28977 3' -58 NC_006146.1 + 15539 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28977 3' -58 NC_006146.1 + 12460 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28977 3' -58 NC_006146.1 + 151903 0.66 0.826789
Target:  5'- -gAGGgGGCCCccacUgGGGUCUGGCUccgGCc -3'
miRNA:   3'- aaUCCaCUGGG----AgCCCGGACCGAa--UG- -5'
28977 3' -58 NC_006146.1 + 146839 0.66 0.826789
Target:  5'- -cAGcGUaGAgCC-CGGGCCUGGCUc-- -3'
miRNA:   3'- aaUC-CA-CUgGGaGCCCGGACCGAaug -5'
28977 3' -58 NC_006146.1 + 18617 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28977 3' -58 NC_006146.1 + 24773 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28977 3' -58 NC_006146.1 + 21695 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28977 3' -58 NC_006146.1 + 27851 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28977 3' -58 NC_006146.1 + 5376 0.66 0.826789
Target:  5'- -cAGG-GAaaacgUCUCGGGCCUGGCc--- -3'
miRNA:   3'- aaUCCaCUg----GGAGCCCGGACCGaaug -5'
28977 3' -58 NC_006146.1 + 12648 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28977 3' -58 NC_006146.1 + 15727 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28977 3' -58 NC_006146.1 + 18805 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28977 3' -58 NC_006146.1 + 21883 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28977 3' -58 NC_006146.1 + 24961 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28977 3' -58 NC_006146.1 + 28039 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28977 3' -58 NC_006146.1 + 47398 0.66 0.818269
Target:  5'- -gAGGcGGCCag-GGGCCUGGCg--- -3'
miRNA:   3'- aaUCCaCUGGgagCCCGGACCGaaug -5'
28977 3' -58 NC_006146.1 + 52768 0.66 0.80958
Target:  5'- --cGGUGACgCUgaGGGCC-GGCggGCg -3'
miRNA:   3'- aauCCACUGgGAg-CCCGGaCCGaaUG- -5'
28977 3' -58 NC_006146.1 + 28261 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.