miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 79006 0.66 0.564617
Target:  5'- cGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 120882 0.66 0.564617
Target:  5'- cGCCuCGACCCcggcugcaucaaCCGGaUCGCCUCCGAc- -3'
miRNA:   3'- uCGG-GCUGGG------------GGUC-GGCGGGGGUUug -5'
28978 3' -64.4 NC_006146.1 + 26498 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 25946 0.66 0.564617
Target:  5'- gAGCCCuGGUCCCCAGCaGCCUCUc--- -3'
miRNA:   3'- -UCGGG-CUGGGGGUCGgCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 14186 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 38957 0.66 0.564617
Target:  5'- uGGCCuUGGCaUCCgGGUgGgCCCCCAGACu -3'
miRNA:   3'- -UCGG-GCUG-GGGgUCGgC-GGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 20342 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 29576 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 23420 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 152100 0.66 0.564617
Target:  5'- gAGCCaGACCCCagugggGGCC-CCCUCGAGu -3'
miRNA:   3'- -UCGGgCUGGGGg-----UCGGcGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 17264 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 129050 0.66 0.555115
Target:  5'- gAGCUgGGCCCagacgCCGGCgcagacaGCCCCCGcGACa -3'
miRNA:   3'- -UCGGgCUGGG-----GGUCGg------CGGGGGU-UUG- -5'
28978 3' -64.4 NC_006146.1 + 149784 0.66 0.555115
Target:  5'- cAGCCUccuCUCCC-GCCGCCCCUu--- -3'
miRNA:   3'- -UCGGGcu-GGGGGuCGGCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 113865 0.66 0.555115
Target:  5'- gGGCCCGGgCCCgAGCCaCCuCUCGucGACc -3'
miRNA:   3'- -UCGGGCUgGGGgUCGGcGG-GGGU--UUG- -5'
28978 3' -64.4 NC_006146.1 + 79095 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 79065 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 79035 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 78886 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 78826 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 78796 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.