miRNA display CGI


Results 41 - 60 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 78826 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 78796 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28978 3' -64.4 NC_006146.1 + 51873 0.66 0.555115
Target:  5'- cAGCCCccgCCCC-GUCGCCCCCc--- -3'
miRNA:   3'- -UCGGGcugGGGGuCGGCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 44511 0.66 0.555115
Target:  5'- -cCCCGGCUgCCaCGGCCccaGCCCCCAc-- -3'
miRNA:   3'- ucGGGCUGG-GG-GUCGG---CGGGGGUuug -5'
28978 3' -64.4 NC_006146.1 + 152100 0.66 0.564617
Target:  5'- gAGCCaGACCCCagugggGGCC-CCCUCGAGu -3'
miRNA:   3'- -UCGGgCUGGGGg-----UCGGcGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 149784 0.66 0.555115
Target:  5'- cAGCCUccuCUCCC-GCCGCCCCUu--- -3'
miRNA:   3'- -UCGGGcu-GGGGGuCGGCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 117441 0.66 0.555115
Target:  5'- --gCCGACCCCCcuggccccGGCCGCUuUCCAGGa -3'
miRNA:   3'- ucgGGCUGGGGG--------UCGGCGG-GGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 68395 0.66 0.536258
Target:  5'- cGUCUGACCUCCcggAGCCGCUgcgCCCGcguccuGACg -3'
miRNA:   3'- uCGGGCUGGGGG---UCGGCGG---GGGU------UUG- -5'
28978 3' -64.4 NC_006146.1 + 170720 0.66 0.536258
Target:  5'- cGCCgCGcCCCCuCAGgccCCGCCCgCCGcGCg -3'
miRNA:   3'- uCGG-GCuGGGG-GUC---GGCGGG-GGUuUG- -5'
28978 3' -64.4 NC_006146.1 + 154882 0.66 0.536258
Target:  5'- gGGCgCaGACCaCCCAGCagccagCGCCCCCc--- -3'
miRNA:   3'- -UCGgG-CUGG-GGGUCG------GCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 34378 0.66 0.536258
Target:  5'- uGCCUGGCCCaggguCCGGCUGggggcgcacCCCCCAc-- -3'
miRNA:   3'- uCGGGCUGGG-----GGUCGGC---------GGGGGUuug -5'
28978 3' -64.4 NC_006146.1 + 138153 0.66 0.536258
Target:  5'- aGGCCCGGCCgCgAuCCuCCCCCGugAACg -3'
miRNA:   3'- -UCGGGCUGGgGgUcGGcGGGGGU--UUG- -5'
28978 3' -64.4 NC_006146.1 + 34322 0.66 0.536258
Target:  5'- aGGCCCGGCCgCgAuCCuCCCCCGugAACg -3'
miRNA:   3'- -UCGGGCUGGgGgUcGGcGGGGGU--UUG- -5'
28978 3' -64.4 NC_006146.1 + 129215 0.66 0.544718
Target:  5'- uGCgCCGugCCCCGGaccugagucgcguCUGCCUgCGGACg -3'
miRNA:   3'- uCG-GGCugGGGGUC-------------GGCGGGgGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 86284 0.66 0.544718
Target:  5'- gAGCUCGAgagcCCCCCuGCCuagacauGCCCCUuGAUc -3'
miRNA:   3'- -UCGGGCU----GGGGGuCGG-------CGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 50801 0.66 0.54566
Target:  5'- gAGCCgGucACgCUCAGCCGCCCUgAAu- -3'
miRNA:   3'- -UCGGgC--UGgGGGUCGGCGGGGgUUug -5'
28978 3' -64.4 NC_006146.1 + 43271 0.66 0.54566
Target:  5'- -aUCCG-CCUCCAGCCuCCCCUGGAg -3'
miRNA:   3'- ucGGGCuGGGGGUCGGcGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 55191 0.66 0.54566
Target:  5'- cGCCCGggggGCUUCCGGCCaCCCCgGGuACg -3'
miRNA:   3'- uCGGGC----UGGGGGUCGGcGGGGgUU-UG- -5'
28978 3' -64.4 NC_006146.1 + 139339 0.66 0.54566
Target:  5'- -cCCCGggggacgggaGCCCCCguucGGCCcacaGCCCCCAauuGACa -3'
miRNA:   3'- ucGGGC----------UGGGGG----UCGG----CGGGGGU---UUG- -5'
28978 3' -64.4 NC_006146.1 + 67256 0.66 0.552273
Target:  5'- cGGCCCGucugGCagagguggucuccgUCCCGGCCgacugucgGCUCCCGGACa -3'
miRNA:   3'- -UCGGGC----UG--------------GGGGUCGG--------CGGGGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.