miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 55224 0.8 0.066031
Target:  5'- cGGcCCCGACCCCCAucccGcCCGCCCCCAu-- -3'
miRNA:   3'- -UC-GGGCUGGGGGU----C-GGCGGGGGUuug -5'
28978 3' -64.4 NC_006146.1 + 42247 0.79 0.087199
Target:  5'- uGCCCG-UCCCC-GCCGUCCCCGAAUg -3'
miRNA:   3'- uCGGGCuGGGGGuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 128393 0.78 0.094013
Target:  5'- uGGCCCGgcgccgcggcGCCCCCcugGGCCGCCUCCcGGCg -3'
miRNA:   3'- -UCGGGC----------UGGGGG---UCGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 48403 0.78 0.096394
Target:  5'- cGGCCuccauucucuCGACCCCgCcGCCGUCCCCGAGCa -3'
miRNA:   3'- -UCGG----------GCUGGGG-GuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 130875 0.78 0.096394
Target:  5'- cGGCUaCGGCCCCCAGCagGCCCCCugcuACg -3'
miRNA:   3'- -UCGG-GCUGGGGGUCGg-CGGGGGuu--UG- -5'
28978 3' -64.4 NC_006146.1 + 47208 0.78 0.101328
Target:  5'- cGCCaGGCCCCUGGCCGCCUCCGc-- -3'
miRNA:   3'- uCGGgCUGGGGGUCGGCGGGGGUuug -5'
28978 3' -64.4 NC_006146.1 + 167819 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 168751 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 170614 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 169683 0.78 0.103884
Target:  5'- gGGCCCcgcggGACCCCCcccuCCGCCCCCGAGg -3'
miRNA:   3'- -UCGGG-----CUGGGGGuc--GGCGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 34257 0.77 0.111642
Target:  5'- cGGCCCcgugccacggGACCCCCGGCCggcauagGCCCCgGGACc -3'
miRNA:   3'- -UCGGG----------CUGGGGGUCGG-------CGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 169491 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 167627 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 168559 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 170422 0.77 0.111919
Target:  5'- cGCCCGACCCC---CCGCCCCgGGACc -3'
miRNA:   3'- uCGGGCUGGGGgucGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 48759 0.77 0.114725
Target:  5'- cGCCCGGCCUCCAGCaGCCgCCGcAGCu -3'
miRNA:   3'- uCGGGCUGGGGGUCGgCGGgGGU-UUG- -5'
28978 3' -64.4 NC_006146.1 + 156102 0.77 0.119645
Target:  5'- cGGCCCGGccggccucuccuucCCCUCAGCCGCCaacaggugCCCGAGCc -3'
miRNA:   3'- -UCGGGCU--------------GGGGGUCGGCGG--------GGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 13865 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 44221 0.77 0.123539
Target:  5'- aAGCggGGCCCUCGGCCGCCCCCu--- -3'
miRNA:   3'- -UCGggCUGGGGGUCGGCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 20020 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.