miRNA display CGI


Results 41 - 60 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 29254 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 26176 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 20020 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 147770 0.76 0.129761
Target:  5'- aAGCCCaGGCUCCCGGCCuCUCCCAGGa -3'
miRNA:   3'- -UCGGG-CUGGGGGUCGGcGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 13056 0.76 0.132979
Target:  5'- uGCCCaGCCaCCCAGCCuCgCCCCAGGCg -3'
miRNA:   3'- uCGGGcUGG-GGGUCGGcG-GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 138089 0.76 0.13627
Target:  5'- cGGCCCuguccacgggGACCCCCuGCCGgCCCgGGGCg -3'
miRNA:   3'- -UCGGG----------CUGGGGGuCGGCgGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 33311 0.76 0.137608
Target:  5'- cGGCCCGgcgaacccgccggcgGCCaCCCGGCUGCCCCaGAGCc -3'
miRNA:   3'- -UCGGGC---------------UGG-GGGUCGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 169959 0.76 0.138619
Target:  5'- cGCCgGugCCCCcgcgaggguccccgGGCCGCCCCgGGGCu -3'
miRNA:   3'- uCGGgCugGGGG--------------UCGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 168095 0.76 0.138619
Target:  5'- cGCCgGugCCCCcgcgaggguccccgGGCCGCCCCgGGGCu -3'
miRNA:   3'- uCGGgCugGGGG--------------UCGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 169027 0.76 0.138619
Target:  5'- cGCCgGugCCCCcgcgaggguccccgGGCCGCCCCgGGGCu -3'
miRNA:   3'- uCGGgCugGGGG--------------UCGGCGGGGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 44580 0.76 0.143079
Target:  5'- uGCCCGGCCCCaca-CGcCCCCCGGGCg -3'
miRNA:   3'- uCGGGCUGGGGgucgGC-GGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 42919 0.75 0.16148
Target:  5'- cGCCCgGAUCCgCGGCUGCCagCCCGAGCg -3'
miRNA:   3'- uCGGG-CUGGGgGUCGGCGG--GGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 84301 0.75 0.165407
Target:  5'- aAGCCCaGCUgccccucaagCCCAGCUGCCCCuCAAGCc -3'
miRNA:   3'- -UCGGGcUGG----------GGGUCGGCGGGG-GUUUG- -5'
28978 3' -64.4 NC_006146.1 + 95421 0.75 0.165407
Target:  5'- --gCCGGCCCCC-GCCGUCCCCGuGACc -3'
miRNA:   3'- ucgGGCUGGGGGuCGGCGGGGGU-UUG- -5'
28978 3' -64.4 NC_006146.1 + 84352 0.75 0.165407
Target:  5'- aAGCCCaGCUgccccucaagCCCAGCUGCCCCuCAAGCc -3'
miRNA:   3'- -UCGGGcUGG----------GGGUCGGCGGGG-GUUUG- -5'
28978 3' -64.4 NC_006146.1 + 93064 0.74 0.16942
Target:  5'- aAGUCCcACCCCCccGCCGCCCCCc--- -3'
miRNA:   3'- -UCGGGcUGGGGGu-CGGCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 16358 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 19436 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 13280 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 49729 0.74 0.173519
Target:  5'- uGGCCuCcGCCCCCAGaggaGCCCCCGGAUc -3'
miRNA:   3'- -UCGG-GcUGGGGGUCgg--CGGGGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.