miRNA display CGI


Results 41 - 60 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 106659 0.66 0.54566
Target:  5'- gAGCCaCG-CCCCUc-CCGCCccggCCCAGGCg -3'
miRNA:   3'- -UCGG-GCuGGGGGucGGCGG----GGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 156549 0.66 0.54566
Target:  5'- gGGaCCCGACCCCaccagcagGGCCGCaacggCCCu-GCg -3'
miRNA:   3'- -UC-GGGCUGGGGg-------UCGGCGg----GGGuuUG- -5'
28978 3' -64.4 NC_006146.1 + 45532 0.66 0.54566
Target:  5'- gGGCCUgGGCCUCCuugggcuuGGCCGCCCUg---- -3'
miRNA:   3'- -UCGGG-CUGGGGG--------UCGGCGGGGguuug -5'
28978 3' -64.4 NC_006146.1 + 86284 0.66 0.544718
Target:  5'- gAGCUCGAgagcCCCCCuGCCuagacauGCCCCUuGAUc -3'
miRNA:   3'- -UCGGGCU----GGGGGuCGG-------CGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 129215 0.66 0.544718
Target:  5'- uGCgCCGugCCCCGGaccugagucgcguCUGCCUgCGGACg -3'
miRNA:   3'- uCG-GGCugGGGGUC-------------GGCGGGgGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 29697 0.66 0.536258
Target:  5'- uGCCCaGuucCCCCCAGgaGCCCCUGGu- -3'
miRNA:   3'- uCGGG-Cu--GGGGGUCggCGGGGGUUug -5'
28978 3' -64.4 NC_006146.1 + 52893 0.66 0.536258
Target:  5'- cGGcCCCGAgCCCCGcauggucugcGUgGCCCCCcggGGGCg -3'
miRNA:   3'- -UC-GGGCUgGGGGU----------CGgCGGGGG---UUUG- -5'
28978 3' -64.4 NC_006146.1 + 154882 0.66 0.536258
Target:  5'- gGGCgCaGACCaCCCAGCagccagCGCCCCCc--- -3'
miRNA:   3'- -UCGgG-CUGG-GGGUCG------GCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 170720 0.66 0.536258
Target:  5'- cGCCgCGcCCCCuCAGgccCCGCCCgCCGcGCg -3'
miRNA:   3'- uCGG-GCuGGGG-GUC---GGCGGG-GGUuUG- -5'
28978 3' -64.4 NC_006146.1 + 138153 0.66 0.536258
Target:  5'- aGGCCCGGCCgCgAuCCuCCCCCGugAACg -3'
miRNA:   3'- -UCGGGCUGGgGgUcGGcGGGGGU--UUG- -5'
28978 3' -64.4 NC_006146.1 + 68395 0.66 0.536258
Target:  5'- cGUCUGACCUCCcggAGCCGCUgcgCCCGcguccuGACg -3'
miRNA:   3'- uCGGGCUGGGGG---UCGGCGG---GGGU------UUG- -5'
28978 3' -64.4 NC_006146.1 + 19951 0.66 0.536258
Target:  5'- cGCCUccCUCCCGGCC-CCCCUcAGCu -3'
miRNA:   3'- uCGGGcuGGGGGUCGGcGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 34322 0.66 0.536258
Target:  5'- aGGCCCGGCCgCgAuCCuCCCCCGugAACg -3'
miRNA:   3'- -UCGGGCUGGgGgUcGGcGGGGGU--UUG- -5'
28978 3' -64.4 NC_006146.1 + 42482 0.66 0.536258
Target:  5'- cGGCCCGGaucacccuCCCCUGGCCGUguucugCCUGGACu -3'
miRNA:   3'- -UCGGGCU--------GGGGGUCGGCGg-----GGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 137694 0.66 0.536258
Target:  5'- -uCCCGGCUCCCccuccGGCCucCCCCCGGGg -3'
miRNA:   3'- ucGGGCUGGGGG-----UCGGc-GGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 34378 0.66 0.536258
Target:  5'- uGCCUGGCCCaggguCCGGCUGggggcgcacCCCCCAc-- -3'
miRNA:   3'- uCGGGCUGGG-----GGUCGGC---------GGGGGUuug -5'
28978 3' -64.4 NC_006146.1 + 103064 0.66 0.535321
Target:  5'- gGGCCCGGCCacgaCCagguggcGGCUGCCCU--GGCu -3'
miRNA:   3'- -UCGGGCUGGg---GG-------UCGGCGGGGguUUG- -5'
28978 3' -64.4 NC_006146.1 + 112653 0.66 0.526913
Target:  5'- aGGCCaccgGGCCCCUuuuauAGCCcuuguccacGCCCCCGGuguGCg -3'
miRNA:   3'- -UCGGg---CUGGGGG-----UCGG---------CGGGGGUU---UG- -5'
28978 3' -64.4 NC_006146.1 + 53327 0.66 0.526913
Target:  5'- gAGCCCGAggaggCCCGGCgGCCgCgGGGCg -3'
miRNA:   3'- -UCGGGCUgg---GGGUCGgCGGgGgUUUG- -5'
28978 3' -64.4 NC_006146.1 + 27329 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.