miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 13545 0.67 0.499263
Target:  5'- cAGCCCcgUCCCCGcCCGCCCggCCAGAg -3'
miRNA:   3'- -UCGGGcuGGGGGUcGGCGGG--GGUUUg -5'
28978 3' -64.4 NC_006146.1 + 13563 0.68 0.420654
Target:  5'- gGGCCCugGGCCCCgagGGCgGCuCCCCucuGACa -3'
miRNA:   3'- -UCGGG--CUGGGGg--UCGgCG-GGGGu--UUG- -5'
28978 3' -64.4 NC_006146.1 + 13865 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 14186 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 14219 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 14307 0.7 0.307797
Target:  5'- uGCCCaGuucCCCCCAGgaGCCCCUAAAa -3'
miRNA:   3'- uCGGG-Cu--GGGGGUCggCGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 15017 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 15408 0.68 0.446049
Target:  5'- aGGCCCG--CCUCAGUccccuCGCCCCUggGCc -3'
miRNA:   3'- -UCGGGCugGGGGUCG-----GCGGGGGuuUG- -5'
28978 3' -64.4 NC_006146.1 + 15558 0.71 0.275075
Target:  5'- gGGCCCcucugGACUccggcuuccccauCCCAGCCGCUCCCcGGCc -3'
miRNA:   3'- -UCGGG-----CUGG-------------GGGUCGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 15701 0.67 0.471391
Target:  5'- cAGCCCaGGCCaggccaccuuagaCCCGGCCaGgCCCCAuAACu -3'
miRNA:   3'- -UCGGG-CUGG-------------GGGUCGG-CgGGGGU-UUG- -5'
28978 3' -64.4 NC_006146.1 + 16134 0.74 0.186353
Target:  5'- uGCCCaGCCaCCCAGCCuCgCCCAGGCg -3'
miRNA:   3'- uCGGGcUGG-GGGUCGGcGgGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16137 0.7 0.321418
Target:  5'- -uCCgGGCCCCaaggCGGCCGCCCUCAGu- -3'
miRNA:   3'- ucGGgCUGGGG----GUCGGCGGGGGUUug -5'
28978 3' -64.4 NC_006146.1 + 16259 0.73 0.204762
Target:  5'- uGCCCGGCCugCCCGGCCuCgCUCCGGGCg -3'
miRNA:   3'- uCGGGCUGG--GGGUCGGcG-GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16358 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16395 0.67 0.499263
Target:  5'- gAGCCUGcuGCCCCaggagaGGCCGgaCCCCGccuGGCg -3'
miRNA:   3'- -UCGGGC--UGGGGg-----UCGGCg-GGGGU---UUG- -5'
28978 3' -64.4 NC_006146.1 + 16623 0.67 0.499263
Target:  5'- cAGCCCcgUCCCCGcCCGCCCggCCAGAg -3'
miRNA:   3'- -UCGGGcuGGGGGUcGGCGGG--GGUUUg -5'
28978 3' -64.4 NC_006146.1 + 16641 0.68 0.420654
Target:  5'- gGGCCCugGGCCCCgagGGCgGCuCCCCucuGACa -3'
miRNA:   3'- -UCGGG--CUGGGGg--UCGgCG-GGGGu--UUG- -5'
28978 3' -64.4 NC_006146.1 + 16943 0.82 0.047367
Target:  5'- cGGCCCGGugugccagcgucCCCCCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGGGUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 17264 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28978 3' -64.4 NC_006146.1 + 17297 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.