Results 41 - 60 of 467 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28978 | 3' | -64.4 | NC_006146.1 | + | 17385 | 0.7 | 0.307797 |
Target: 5'- uGCCCaGuucCCCCCAGgaGCCCCUAAAa -3' miRNA: 3'- uCGGG-Cu--GGGGGUCggCGGGGGUUUg -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 18095 | 0.66 | 0.526913 |
Target: 5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3' miRNA: 3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 18486 | 0.68 | 0.446049 |
Target: 5'- aGGCCCG--CCUCAGUccccuCGCCCCUggGCc -3' miRNA: 3'- -UCGGGCugGGGGUCG-----GCGGGGGuuUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 18636 | 0.71 | 0.275075 |
Target: 5'- gGGCCCcucugGACUccggcuuccccauCCCAGCCGCUCCCcGGCc -3' miRNA: 3'- -UCGGG-----CUGG-------------GGGUCGGCGGGGGuUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 18779 | 0.67 | 0.471391 |
Target: 5'- cAGCCCaGGCCaggccaccuuagaCCCGGCCaGgCCCCAuAACu -3' miRNA: 3'- -UCGGG-CUGG-------------GGGUCGG-CgGGGGU-UUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19212 | 0.74 | 0.186353 |
Target: 5'- uGCCCaGCCaCCCAGCCuCgCCCAGGCg -3' miRNA: 3'- uCGGGcUGG-GGGUCGGcGgGGGUUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19215 | 0.7 | 0.321418 |
Target: 5'- -uCCgGGCCCCaaggCGGCCGCCCUCAGu- -3' miRNA: 3'- ucGGgCUGGGG----GUCGGCGGGGGUUug -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19337 | 0.73 | 0.204762 |
Target: 5'- uGCCCGGCCugCCCGGCCuCgCUCCGGGCg -3' miRNA: 3'- uCGGGCUGG--GGGUCGGcG-GGGGUUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19436 | 0.74 | 0.173519 |
Target: 5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3' miRNA: 3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19472 | 0.67 | 0.499263 |
Target: 5'- gAGCCUGcuGCCCCaggagaGGCCGgaCCCCGccuGGCg -3' miRNA: 3'- -UCGGGC--UGGGGg-----UCGGCg-GGGGU---UUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19701 | 0.67 | 0.499263 |
Target: 5'- cAGCCCcgUCCCCGcCCGCCCggCCAGAg -3' miRNA: 3'- -UCGGGcuGGGGGUcGGCGGG--GGUUUg -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19719 | 0.68 | 0.420654 |
Target: 5'- gGGCCCugGGCCCCgagGGCgGCuCCCCucuGACa -3' miRNA: 3'- -UCGGG--CUGGGGg--UCGgCG-GGGGu--UUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 19951 | 0.66 | 0.536258 |
Target: 5'- cGCCUccCUCCCGGCC-CCCCUcAGCu -3' miRNA: 3'- uCGGGcuGGGGGUCGGcGGGGGuUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 20020 | 0.77 | 0.123539 |
Target: 5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3' miRNA: 3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 20342 | 0.66 | 0.564617 |
Target: 5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3' miRNA: 3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 20375 | 1.07 | 0.000721 |
Target: 5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3' miRNA: 3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 20463 | 0.7 | 0.307797 |
Target: 5'- uGCCCaGuucCCCCCAGgaGCCCCUAAAa -3' miRNA: 3'- uCGGG-Cu--GGGGGUCggCGGGGGUUUg -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 21173 | 0.66 | 0.526913 |
Target: 5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3' miRNA: 3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 21564 | 0.68 | 0.446049 |
Target: 5'- aGGCCCG--CCUCAGUccccuCGCCCCUggGCc -3' miRNA: 3'- -UCGGGCugGGGGUCG-----GCGGGGGuuUG- -5' |
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28978 | 3' | -64.4 | NC_006146.1 | + | 21714 | 0.71 | 0.275075 |
Target: 5'- gGGCCCcucugGACUccggcuuccccauCCCAGCCGCUCCCcGGCc -3' miRNA: 3'- -UCGGG-----CUGG-------------GGGUCGGCGGGGGuUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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